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Clc05G12230 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G12230
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionglutelin type-A 2-like
Genome locationClcChr05:10181999..10182539
RNA-Seq ExpressionClc05G12230
SyntenyClc05G12230
Gene Ontology termsGO:0045735 - nutrient reservoir activity (molecular function)
InterPro domainsIPR006044 - 11-S seed storage protein, plant
IPR006045 - Cupin 1
IPR011051 - RmlC-like cupin domain superfamily
IPR014710 - RmlC-like jelly roll fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151504.1 legumin J [Cucumis sativus]1.7e-4385.98Show/hide
Query:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF
        RSPVY+AEPSDQLIYV KGSGKIQ+VG S KFD +VK GQLILVPRYFAVGKIAGEEGLECIS+I  THP+VEELAGKTS+ EALS EVFQVSFNVTAEF
Subjt:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF

Query:  EKLFRSK
        EKLFRSK
Subjt:  EKLFRSK

XP_008456076.1 PREDICTED: glutelin type-A 2-like [Cucumis melo]1.7e-4385.05Show/hide
Query:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF
        RSPVY+AEPSDQLIYV KGSGKIQ+VG S KFD +VK+GQLILVPRYFAVGK+AGEEGLECIS+I  THP+VEELAGKTS+ EALS EVFQVSFNVTAEF
Subjt:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF

Query:  EKLFRSK
        EKLFRSK
Subjt:  EKLFRSK

XP_022985328.1 12S seed storage protein CRD-like [Cucurbita maxima]1.5e-4285.98Show/hide
Query:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF
        RSPVYVAEP DQLIYVAKG GKIQIVG S K D EVK+GQLILVP++FAVGKIAGE+GLECISIIT THP+VEELAGKTS+ EALSPEVFQVSFNVTAEF
Subjt:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF

Query:  EKLFRSK
        EKL RSK
Subjt:  EKLFRSK

XP_038877969.1 13S globulin basic chain-like [Benincasa hispida]5.0e-4388.46Show/hide
Query:  VYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEFEKL
        +YVAEPSDQLIYVAKGSGKIQIVG S K +VEVK+GQLILVPRYFAVGKIAGEEGLECIS+ITDTHPLVEELAGKTS+ EALSPEVFQVS+NVTA+FE+L
Subjt:  VYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEFEKL

Query:  FRSK
        FRSK
Subjt:  FRSK

XP_038880006.1 LOW QUALITY PROTEIN: 12S seed storage protein CRD-like [Benincasa hispida]1.2e-4488.79Show/hide
Query:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF
        RSPVY+AEPSDQLIYVAKGSGKIQIVGLS K + EVK+GQLILVPRYFAVGKIAGEEGLECIS+ITDTHPLVEELA KTS+ EALSPEVFQVS+NVTAEF
Subjt:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF

Query:  EKLFRSK
        E+LFRSK
Subjt:  EKLFRSK

TrEMBL top hitse value%identityAlignment
A0A0A0L6K0 Uncharacterized protein8.3e-4485.98Show/hide
Query:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF
        RSPVY+AEPSDQLIYV KGSGKIQ+VG S KFD +VK GQLILVPRYFAVGKIAGEEGLECIS+I  THP+VEELAGKTS+ EALS EVFQVSFNVTAEF
Subjt:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF

Query:  EKLFRSK
        EKLFRSK
Subjt:  EKLFRSK

A0A1S3C2D5 glutelin type-A 2-like8.3e-4485.05Show/hide
Query:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF
        RSPVY+AEPSDQLIYV KGSGKIQ+VG S KFD +VK+GQLILVPRYFAVGK+AGEEGLECIS+I  THP+VEELAGKTS+ EALS EVFQVSFNVTAEF
Subjt:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF

Query:  EKLFRSK
        EKLFRSK
Subjt:  EKLFRSK

A0A5A7T7U8 Glutelin type-A 2-like8.3e-4485.05Show/hide
Query:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF
        RSPVY+AEPSDQLIYV KGSGKIQ+VG S KFD +VK+GQLILVPRYFAVGK+AGEEGLECIS+I  THP+VEELAGKTS+ EALS EVFQVSFNVTAEF
Subjt:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF

Query:  EKLFRSK
        EKLFRSK
Subjt:  EKLFRSK

A0A5D3BLA4 Glutelin type-A 2-like9.2e-4384.76Show/hide
Query:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF
        RSPVY+AEPSDQLIYV KGSGKIQ+VG S KFD +VK+GQLILVPRYFAVGK+AGEEGLECIS+I  THP+VEELAGKTS+ EALS EVFQVSFNVTAEF
Subjt:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF

Query:  EKLFR
        EKLFR
Subjt:  EKLFR

A0A6J1JDB2 12S seed storage protein CRD-like7.0e-4385.98Show/hide
Query:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF
        RSPVYVAEP DQLIYVAKG GKIQIVG S K D EVK+GQLILVP++FAVGKIAGE+GLECISIIT THP+VEELAGKTS+ EALSPEVFQVSFNVTAEF
Subjt:  RSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEF

Query:  EKLFRSK
        EKL RSK
Subjt:  EKLFRSK

SwissProt top hitse value%identityAlignment
O23878 13S globulin seed storage protein 11.5e-1037.5Show/hide
Query:  IYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEFEKLFRSK
        +YV +G G++Q+VG   +  FD  V+ GQ+++VP+ FAV   AG EGLE + +  D + +   +AGKTS+  A+  EV   S++++   ++ FR K
Subjt:  IYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEFEKLFRSK

P09800 Legumin B2.2e-0937.08Show/hide
Query:  LIYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE
        ++Y+ +G+G+IQIV  + +  FD +V+ GQ+I VP+  AV K AG  G E I+  T+ +  + ++AG+ SI   L  +V   SF ++ E
Subjt:  LIYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE

P83004 13S globulin basic chain1.5e-1343.18Show/hide
Query:  IYVAKGSGKIQIVG--LSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE
        +YV +G+ K+Q+VG   +K FD EVK GQLI+VP+YFAV K AG +G E ++  T+ + ++  L G+ S + A+  EV + SF +++E
Subjt:  IYVAKGSGKIQIVG--LSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE

Q8GZP6 11S globulin seed storage protein Ana o 2.0101 (Fragment)5.8e-1039.13Show/hide
Query:  SDQLIYVAKGSGKIQIVGL--SKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE
        S  +IY  KG G++Q+V    ++ FD EV+ GQ+++VP+ FAV K A EE  E IS  T+   +   LAG+TS+   +  EV   +F ++ E
Subjt:  SDQLIYVAKGSGKIQIVGL--SKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE

Q9XFM4 13S globulin seed storage protein 31.5e-1037.5Show/hide
Query:  IYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEFEKLFRSK
        +YV +G G++Q+VG   +  FD  V+ GQ+++VP+ FAV   AG EGLE + +  D + +   +AGKTS+  A+  EV   S++++   ++ FR K
Subjt:  IYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEFEKLFRSK

Arabidopsis top hitse value%identityAlignment
AT1G03890.1 RmlC-like cupins superfamily protein2.7e-1038.04Show/hide
Query:  LIYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEFEK
        ++YV  G  KIQ+V  + +  F+ +V  GQ+I++P+ FAV K AGE G E IS  T+ +  +  L+G+TS   A+  +V + S+ V  E  K
Subjt:  LIYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEFEK

AT1G07750.1 RmlC-like cupins superfamily protein5.7e-2143.93Show/hide
Query:  SPVYVAEPSDQLIYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE
        SP +  + + Q+ Y+  GSG++Q+VG   K   +  +K G L +VPR+F V KIA  +G+   SI+T   P+   LAG TS+W++LSPEV Q +F V  E
Subjt:  SPVYVAEPSDQLIYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE

Query:  FEKLFRS
         EK FRS
Subjt:  FEKLFRS

AT2G28680.1 RmlC-like cupins superfamily protein1.0e-2248.15Show/hide
Query:  SPVYVAEPSDQLIYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE
        SP +  + + Q+ Y+  GSG++QIVG   K   +  VK G L +VPR+F V KIA  +GL   SI+T   P+   LAG+TS+W+ALSPEV Q +F V  E
Subjt:  SPVYVAEPSDQLIYVAKGSGKIQIVGLSKK--FDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE

Query:  FEKLFRSK
         EK FRSK
Subjt:  FEKLFRSK

AT5G44120.1 RmlC-like cupins superfamily protein1.2e-0733.7Show/hide
Query:  SDQLIYVAKGSGKIQIV--GLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE
        ++ ++YV  G  +IQIV    ++ FD +V  GQLI VP+ F+V K A     + +   T+ +  +  LAG+TS+   L  EV    F ++ E
Subjt:  SDQLIYVAKGSGKIQIV--GLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE

AT5G44120.3 RmlC-like cupins superfamily protein1.2e-0733.7Show/hide
Query:  SDQLIYVAKGSGKIQIV--GLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE
        ++ ++YV  G  +IQIV    ++ FD +V  GQLI VP+ F+V K A     + +   T+ +  +  LAG+TS+   L  EV    F ++ E
Subjt:  SDQLIYVAKGSGKIQIV--GLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCCAGGTCGCCGGTGTACGTCGCTGAGCCGTCCGATCAACTGATCTACGTGGCTAAAGGATCCGGGAAGATTCAGATCGTCGGACTTTCAAAGAAATTTGATGT
AGAGGTGAAAGTGGGTCAGCTGATTTTAGTCCCCAGATACTTCGCCGTGGGGAAAATCGCTGGAGAAGAAGGCTTGGAGTGCATTTCCATTATTACAGATACACATCCTT
TGGTGGAAGAATTGGCCGGAAAGACATCGATTTGGGAGGCATTGTCGCCGGAGGTTTTTCAAGTTTCTTTCAACGTCACGGCAGAGTTCGAAAAGCTGTTTAGGTCAAAG
GCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCATCCAGGTCGCCGGTGTACGTCGCTGAGCCGTCCGATCAACTGATCTACGTGGCTAAAGGATCCGGGAAGATTCAGATCGTCGGACTTTCAAAGAAATTTGATGT
AGAGGTGAAAGTGGGTCAGCTGATTTTAGTCCCCAGATACTTCGCCGTGGGGAAAATCGCTGGAGAAGAAGGCTTGGAGTGCATTTCCATTATTACAGATACACATCCTT
TGGTGGAAGAATTGGCCGGAAAGACATCGATTTGGGAGGCATTGTCGCCGGAGGTTTTTCAAGTTTCTTTCAACGTCACGGCAGAGTTCGAAAAGCTGTTTAGGTCAAAG
GCATAATAACAAAAGCTTATCTTAAGATGAAAGATAATAATTGATCATTGTATTATTATCATCCACTCATGTATTGATTTGGTCTATCTTTGCAACATGACTCTATTTCA
CTTTC
Protein sequenceShow/hide protein sequence
MPSRSPVYVAEPSDQLIYVAKGSGKIQIVGLSKKFDVEVKVGQLILVPRYFAVGKIAGEEGLECISIITDTHPLVEELAGKTSIWEALSPEVFQVSFNVTAEFEKLFRSK
A