CuGenDBv2

Gene ID	Clc05G12300
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Maternal effect embryo arrest 9
Genome location	ClcChr05:10258427..10259516
RNA-Seq Expression	Clc05G12300
Synteny	Clc05G12300
Gene Ontology terms	GO:0009555 - pollen development (biological process) GO:0009793 - embryo development ending in seed dormancy (biological process) GO:0015074 - DNA integration (biological process) GO:0009506 - plasmodesma (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004149957.1 uncharacterized protein LOC101218253 [Cucumis sativus]

1.0e-64

95.24

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Query:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
        MEALISQFTFLSDQAL  KNFDPSTIEDLMKLFEIEAYKSWAA+ELQH NE QDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
Subjt:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE

Query:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS
        KARKMGSLMEKAA+VASKRYMEAA NSATASMRSAWKAISSNKVHPS
Subjt:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

XP_022942791.1 uncharacterized protein LOC111447720 [Cucurbita moschata]

2.0e-63

93.2

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Query:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
        MEALISQFTFLSD+ALQ KNFDPSTIEDLMKLFEIEAY SWAA+ELQH NE +DAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ L+DKSE
Subjt:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE

Query:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS
        KARKMGSLMEKAAAVASKRYMEAA NSATASMRSAWKAISSNKVHPS
Subjt:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

XP_023533822.1 uncharacterized protein LOC111795549 isoform X2 [Cucurbita pepo subsp. pepo]

4.4e-63

93.2

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Query:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
        MEALISQFTFLSD+ALQ KNFDPSTIEDLMKLFEIEAY SWAAMELQH NE +DAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ L+DKSE
Subjt:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE

Query:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS
        KARKMG LMEKAAAVASKRYMEAA NSATASMRSAWKAISSNKVHPS
Subjt:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

XP_023551868.1 uncharacterized protein LOC111809710 [Cucurbita pepo subsp. pepo]

7.5e-63

93.88

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Query:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
        MEALISQFTFLSDQAL  KNFDPSTIEDLMKLFEIEAYKSWAA ELQ  NEAQ+AEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+L+DKSE
Subjt:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE

Query:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS
        KARKMGSLMEKAAAVASKRYMEAA NSATASMRSAWKAISSNKVHPS
Subjt:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

XP_038885707.1 uncharacterized protein LOC120075975 [Benincasa hispida]

1.4e-64

95.24

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Query:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
        MEALISQFTFLSDQAL  KNFDPSTIEDLMKLFEIEAYKSWAAMELQH NE QDAEIAM QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+LLDKSE
Subjt:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE

Query:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS
        KARKMGSLMEKAAAVASKRYMEAA NSATASMRSAWKAISSNKVHPS
Subjt:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAB6 Uncharacterized protein

5.1e-65

95.24

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Query:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
        MEALISQFTFLSDQAL  KNFDPSTIEDLMKLFEIEAYKSWAA+ELQH NE QDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
Subjt:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE

Query:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS
        KARKMGSLMEKAA+VASKRYMEAA NSATASMRSAWKAISSNKVHPS
Subjt:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

A0A5D3BKS0 Uncharacterized protein

8.1e-63

92.52

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Query:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
        MEALIS FTFLSDQ L  KNFDPSTIEDLMKLFEIE YKSWAA+ELQH NE QDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
Subjt:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE

Query:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS
        KARKMGSLMEKA +VASKRYMEAA NSATASMRSAWKAISSNKVHPS
Subjt:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

A0A6J1E4Z9 uncharacterized protein LOC111430656

8.1e-63

93.2

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Query:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
        MEALISQFTFLSDQAL+ KNFDPSTIEDLMKLFEIEAYKSWAA ELQ  NEAQ+AEIAMQ+AEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+L+DKSE
Subjt:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE

Query:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS
        KARKMGSLMEKAAAVASKRYMEAA NSATASMRSAWKAISSNKVHPS
Subjt:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

A0A6J1FR93 uncharacterized protein LOC111447720

9.6e-64

93.2

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Query:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
        MEALISQFTFLSD+ALQ KNFDPSTIEDLMKLFEIEAY SWAA+ELQH NE +DAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ L+DKSE
Subjt:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE

Query:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS
        KARKMGSLMEKAAAVASKRYMEAA NSATASMRSAWKAISSNKVHPS
Subjt:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

A0A6J1JCA1 uncharacterized protein LOC111483158

1.4e-62

92.52

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Query:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
        MEALISQFTFLSDQAL  KNFDPSTIEDLMKLFEIEAYKSWAA ELQ  NEAQ+AEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAE ELQ+L+DKSE
Subjt:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE

Query:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS
        KARKMGSLMEKAAA+ASKRYMEAA NSATASMRSAWKAISSNKVHPS
Subjt:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G60870.1 maternal effect embryo arrest 9

8.9e-38

58.5

Show/hide

Query:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE
        MEALI  FT LSDQAL  K FDPS IEDLM+LFE+++YK+WAA+E +   E ++AE ++++AE  LD  ME  M+E+RR  EE +RM  AEL++L +K+E
Subjt:  MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSE

Query:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS
         AR+ G+LMEKAA VA+KR++ AA  SA ASMRSAWK  + NKVHPS
Subjt:  KARKMGSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

Sequences

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CDS sequence

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ATGGAAGCTCTCATCTCCCAGTTCACCTTCCTCTCCGATCAAGCTCTACAACACAAGAATTTCGACCCTTCCACCATAGAAGACCTCATGAAGCTCTTCGAGATC
GAAGCCTACAAGTCCTGGGCCGCCATGGAGCTCCAACACCACAACGAAGCTCAAGACGCTGAGATCGCCATGCAGCAGGCTGAGGATTATCTCGATTCCGTTATG
GAAGACGCCATGGATGAATTCAGACGGTTCGAGGAGGAGTTCGATCGGATGGCTGAAGCTGAGCTTCAACAACTCCTTGACAAGTCTGAGAAGGCTCGCAAGATG
GGCAGTTTGATGGAGAAGGCTGCTGCGGTTGCTTCCAAGAGGTACATGGAGGCAGCCACGAATTCCGCCACCGCTTCCATGAGATCCGCTTGGAAGGCTATTTCC
TCTAATAAGGTTCATCCTTCTTGA

mRNA sequence

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TATGGGTCCAAGCCTAAGATTCCTTCTCAAACGTTCAATTCTACTTTTTGAGGTGCTATAAACTCAGCAAACACTGCTCAAACCTTCTTCCCACTGCTCCCACCA
TCATCATCTGATTCTCCATTCTCAACCATCCATTACCCACTTTTCTCCTTCCTCAGATCTCTAAATTTCCCCCAAATCCCTCTTCCAATGGAAGCTCTCATCTCC
CAGTTCACCTTCCTCTCCGATCAAGCTCTACAACACAAGAATTTCGACCCTTCCACCATAGAAGACCTCATGAAGCTCTTCGAGATCGAAGCCTACAAGTCCTGG
GCCGCCATGGAGCTCCAACACCACAACGAAGCTCAAGACGCTGAGATCGCCATGCAGCAGGCTGAGGATTATCTCGATTCCGTTATGGAAGACGCCATGGATGAA
TTCAGACGGTTCGAGGAGGAGTTCGATCGGATGGCTGAAGCTGAGCTTCAACAACTCCTTGACAAGTCTGAGAAGGCTCGCAAGATGGGCAGTTTGATGGAGAAG
GCTGCTGCGGTTGCTTCCAAGAGGTACATGGAGGCAGCCACGAATTCCGCCACCGCTTCCATGAGATCCGCTTGGAAGGCTATTTCCTCTAATAAGGTTCATCCT
TCTTGAAGCCGCTTGCTATTTCTCTGGCATTTTACTAGCTTTCATTTCCTGTTGATTTGAAATCTATTATTTACTTTTTCGATGTCGGCTCTCTGGAAATTTGGA
TCAAAACCCTACTTTCAGAAGCTTTCTACTTGTACTCTACTTTCAGGAACTCAAGGAACTATCTCCATAAACTGTAAAATTAATGCATAAATAATTACAAATTTC
ATACTCAATTCATCAACATTCCTACATATGTGTGTAGTCTGCTACTCAAGGATACAAATTGCATTATCATAATATTCTGCTTACATAAAGAGTAAACAAATTGTG
GAACTGAAAAATTAATGCCTAAGTTGCTACCTAAGTTATACTTCAACTACCCAATGTTCATTCCTGTTCAAGAGTGATTTCTAGATACAGAAATTACATAATCGA
ACTATGGTGATTCTGAGAAATGGTGCTTGATTGACTTCCT

Protein sequence

Show/hide protein sequence

MEALISQFTFLSDQALQHKNFDPSTIEDLMKLFEIEAYKSWAAMELQHHNEAQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSEKARKM
GSLMEKAAAVASKRYMEAATNSATASMRSAWKAISSNKVHPS

Clc05G12300 (gene) of Watermelon (cordophanus) v2 genome