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Clc05G12440 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G12440
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptioncytochrome b-c1 complex subunit 6-like
Genome locationClcChr05:10408448..10410784
RNA-Seq ExpressionClc05G12440
SyntenyClc05G12440
Gene Ontology termsGO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c (biological process)
GO:0005750 - mitochondrial respiratory chain complex III (cellular component)
InterPro domainsIPR003422 - Cytochrome b-c1 complex, subunit 6
IPR023184 - Ubiquinol-cytochrome C reductase hinge domain
IPR036811 - Ubiquinol-cytochrome C reductase hinge domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650514.1 hypothetical protein Csa_011326 [Cucumis sativus]1.1e-3059.2Show/hide
Query:  SLSFIMLKIICMDINLSTFPCFF------IICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKH
        +++F ++KI    I  S   C F      ++  ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACVKRIQGDDSGHKH
Subjt:  SLSFIMLKIICMDINLSTFPCFF------IICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKH

Query:  CTGQYFDYWSCIDKCVAPKLFTKLK
        CTGQYFDYWSCIDKCVAPKL TKLK
Subjt:  CTGQYFDYWSCIDKCVAPKLFTKLK

KAG6576964.1 Cytochrome b-c1 complex subunit 6-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3068.37Show/hide
Query:  FFIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        ++++  ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACVKRIQGD+SGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
Subjt:  FFIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

KAG6600342.1 Cytochrome b-c1 complex subunit 6-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3068.04Show/hide
Query:  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        +++  ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACVKRIQGDDSGHKHCTGQYFDYWSC+DKCVAPKLFTK+K
Subjt:  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

KAG7014985.1 hypothetical protein SDJN02_22616, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-3068.37Show/hide
Query:  FFIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        ++++  ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACVKRIQGD+SGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
Subjt:  FFIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

XP_022942987.1 cytochrome b-c1 complex subunit 6-like [Cucurbita moschata]1.4e-3068.04Show/hide
Query:  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        +++  ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACVKRIQGDDSGHKHCTGQYFDYWSC+DKCVAPKLFTK+K
Subjt:  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

TrEMBL top hitse value%identityAlignment
A0A1S3C350 Cytochrome b-c1 complex subunit 61.2e-3073.91Show/hide
Query:  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
Subjt:  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

A0A5E4EXD3 PREDICTED: cytochrome1.6e-3067.01Show/hide
Query:  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        F+ C ADEEPVDQK+YLEE+CKPKCVKPLLEYQ                        ACVKRIQGD+SGHKHCTGQYFDYWSC+DKCVAPKLF KLK
Subjt:  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

A0A6J1FRR8 cytochrome b-c1 complex subunit 6-like7.0e-3168.04Show/hide
Query:  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        +++  ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACVKRIQGDDSGHKHCTGQYFDYWSC+DKCVAPKLFTK+K
Subjt:  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

A0A6J1J694 Cytochrome b-c1 complex subunit 62.7e-3071.74Show/hide
Query:  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACVKRIQGDDSGHKHCTGQYFDYWSC+DKCVAPKLFTK+K
Subjt:  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

M5XBF4 UCR_hinge domain-containing protein1.6e-3067.01Show/hide
Query:  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        F+ C ADEEPVDQK+YLEE+CKPKCVKPLLEYQ                        ACVKRIQGD+SGHKHCTGQYFDYWSC+DKCVAPKLF KLK
Subjt:  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

SwissProt top hitse value%identityAlignment
P48504 Cytochrome b-c1 complex subunit 65.7e-2254.35Show/hide
Query:  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        +DEE VD K  LE +CKPKCV+ L EYQ                        AC KR++GD+SGHKHCTGQYFDYW CIDKCVA KLF  LK
Subjt:  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

Q0WWE3 Cytochrome b-c1 complex subunit 6-1, mitochondrial2.2e-2966.3Show/hide
Query:  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        AD+E VD K+YLEE+CKPKCVKPLLEYQ                        ACVKRIQGDDSGHKHCTGQYFDYW CIDKCVAPKLF KLK
Subjt:  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

Q9SJV7 Cytochrome b-c1 complex subunit 6-2, mitochondrial6.8e-2359.04Show/hide
Query:  DEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA
        +E+ VDQKRY EE+CKPKCVKPLLEYQ                        ACVKRIQ D+SGHKHCTGQYFDYW C+DKCV+
Subjt:  DEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA

Arabidopsis top hitse value%identityAlignment
AT1G15120.1 Ubiquinol-cytochrome C reductase hinge protein1.5e-3066.3Show/hide
Query:  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
        AD+E VD K+YLEE+CKPKCVKPLLEYQ                        ACVKRIQGDDSGHKHCTGQYFDYW CIDKCVAPKLF KLK
Subjt:  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

AT1G15120.2 Ubiquinol-cytochrome C reductase hinge protein2.0e-2556.25Show/hide
Query:  INLSTFPCFFIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKC
        +++S F        AD+E VD K+YLEE+CKPKCVKPLLEYQ                        ACVKRIQGDDSGHKHCTGQYFDYW CIDKC
Subjt:  INLSTFPCFFIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKC

AT2G01090.1 Ubiquinol-cytochrome C reductase hinge protein4.8e-2459.04Show/hide
Query:  DEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA
        +E+ VDQKRY EE+CKPKCVKPLLEYQ                        ACVKRIQ D+SGHKHCTGQYFDYW C+DKCV+
Subjt:  DEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA

AT2G01090.2 Ubiquinol-cytochrome C reductase hinge protein4.8e-2459.04Show/hide
Query:  DEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA
        +E+ VDQKRY EE+CKPKCVKPLLEYQ                        ACVKRIQ D+SGHKHCTGQYFDYW C+DKCV+
Subjt:  DEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTTCCATACCCTGGGTCTTTATCTTTCATAATGTTGAAGATTATTTGTATGGATATTAACTTATCTACATTTCCTTGTTTCTTTATAATATGTAGGGCGGATGA
AGAACCCGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAACCCAAGTGTGTGAAACCACTACTTGAATATCAGGATGTGTTTTCCCTGAAAAGTGGCACAATTTATT
TCGTCTCTCATATCTGGGTTTCAGCTGATGACTTGTTGGCGTGCGTGAAGAGAATTCAAGGGGATGACAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGG
TCTTGCATTGACAAATGTGTTGCACCAAAACTATTTACGAAACTTAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTTCCATACCCTGGGTCTTTATCTTTCATAATGTTGAAGATTATTTGTATGGATATTAACTTATCTACATTTCCTTGTTTCTTTATAATATGTAGGGCGGATGA
AGAACCCGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAACCCAAGTGTGTGAAACCACTACTTGAATATCAGGATGTGTTTTCCCTGAAAAGTGGCACAATTTATT
TCGTCTCTCATATCTGGGTTTCAGCTGATGACTTGTTGGCGTGCGTGAAGAGAATTCAAGGGGATGACAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGG
TCTTGCATTGACAAATGTGTTGCACCAAAACTATTTACGAAACTTAAGTAA
Protein sequenceShow/hide protein sequence
MSFPYPGSLSFIMLKIICMDINLSTFPCFFIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYW
SCIDKCVAPKLFTKLK