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Clc05G12970 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G12970
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPathogenesis-related homeodomain protein
Genome locationClcChr05:10961165..10962011
RNA-Seq ExpressionClc05G12970
SyntenyClc05G12970
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037199.1 pathogenesis-related homeodomain protein [Cucumis melo var. makuwa]5.8e-0877.27Show/hide
Query:  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD
        RAIF+FCK CQLE PWE SQANRT ELQLPFGL S   DRSLM+
Subjt:  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD
TYK13874.1 pathogenesis-related homeodomain protein [Cucumis melo var. makuwa]5.8e-0877.27Show/hide
Query:  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD
        RAIF+FCK CQLE PWE SQANRT ELQLPFGL S   DRSLM+
Subjt:  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD
TrEMBL top hitse value%identityAlignment
A0A5A7T752 Pathogenesis-related homeodomain protein2.8e-0877.27Show/hide
Query:  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD
        RAIF+FCK CQLE PWE SQANRT ELQLPFGL S   DRSLM+
Subjt:  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD
A0A5D3CS50 Pathogenesis-related homeodomain protein2.8e-0877.27Show/hide
Query:  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD
        RAIF+FCK CQLE PWE SQANRT ELQLPFGL S   DRSLM+
Subjt:  RAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATTATTCGGCTATTTACCCTCTTCCAAGAAACACACAAGGTCAGATGCTGGCATTGTTTGAAGGGAGGGCCATCTTTGAATTTTGCAAGCTATGCCAACTTGA
ACACCCCTGGGAAAGAAGCCAGGCAAATAGAACTAGAGAGCTACAGCTACCCTTCGGCCTCGGAAGCTTTGCTGCAGATAGATCACTTATGGATGCAACATCGCTCTCAA
GTTCTGCAAAATCGAAATTTGGATCCTACTTTTATCAAATTGAACGAGTAAAAATGCTGTCAGCAAGTCAAATTGGTATCAAATCCTCCTCCATGCTGATGGAGCTTACT
TCCAAGATTTCTGGATGTTTTCATCTTCTGAACACTGGAAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATTATTCGGCTATTTACCCTCTTCCAAGAAACACACAAGGTCAGATGCTGGCATTGTTTGAAGGGAGGGCCATCTTTGAATTTTGCAAGCTATGCCAACTTGA
ACACCCCTGGGAAAGAAGCCAGGCAAATAGAACTAGAGAGCTACAGCTACCCTTCGGCCTCGGAAGCTTTGCTGCAGATAGATCACTTATGGATGCAACATCGCTCTCAA
GTTCTGCAAAATCGAAATTTGGATCCTACTTTTATCAAATTGAACGAGTAAAAATGCTGTCAGCAAGTCAAATTGGTATCAAATCCTCCTCCATGCTGATGGAGCTTACT
TCCAAGATTTCTGGATGTTTTCATCTTCTGAACACTGGAAGGTGA
Protein sequenceShow/hide protein sequence
MGNYSAIYPLPRNTQGQMLALFEGRAIFEFCKLCQLEHPWERSQANRTRELQLPFGLGSFAADRSLMDATSLSSSAKSKFGSYFYQIERVKMLSASQIGIKSSSMLMELT
SKISGCFHLLNTGR