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Clc05G13545 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G13545
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCold-regulated protein
Genome locationClcChr05:12045899..12046132
RNA-Seq ExpressionClc05G13545
SyntenyClc05G13545
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457074.1 PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]4.1e-3693.51Show/hide
Query:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
        MAVG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIMAHPATVV+PSVSNA+PI
Subjt:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
XP_022143411.1 uncharacterized protein LOC111013291 [Momordica charantia]3.5e-3594.81Show/hide
Query:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
        MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFA AA+VEWPVGALVYCFRH KGRRIMAHPATVV+PSVSNAVPI
Subjt:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
XP_022935253.1 uncharacterized protein LOC111442190 [Cucurbita moschata]1.6e-3592.21Show/hide
Query:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
        MAVGIGVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRHHKGRRIMAHP TVV+PSVSNAVPI
Subjt:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
XP_023528466.1 uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo]1.2e-3593.51Show/hide
Query:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
        MAVGIGVPIC+ECGTH NPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRHHKGRRIMAHP TVV+PSVSNAVPI
Subjt:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
XP_031737948.1 uncharacterized protein LOC116402578 [Cucumis sativus]7.0e-3694.81Show/hide
Query:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
        M VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIMAHPATVV+PSVSNAVPI
Subjt:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
TrEMBL top hitse value%identityAlignment
A0A0A0LA45 Uncharacterized protein3.4e-3694.81Show/hide
Query:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
        M VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIMAHPATVV+PSVSNAVPI
Subjt:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
A0A1S3C5C8 uncharacterized protein LOC1034968422.0e-3693.51Show/hide
Query:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
        MAVG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIMAHPATVV+PSVSNA+PI
Subjt:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
A0A2N9J3H0 Uncharacterized protein1.0e-3285.71Show/hide
Query:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
        M  GIG+P+C++CGT SNPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRH KGRRIMAHPATVV+PSVSNA+PI
Subjt:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
A0A6J1CQ64 uncharacterized protein LOC1110132911.7e-3594.81Show/hide
Query:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
        MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFA AA+VEWPVGALVYCFRH KGRRIMAHPATVV+PSVSNAVPI
Subjt:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
A0A6J1FA13 uncharacterized protein LOC1114421907.5e-3692.21Show/hide
Query:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
        MAVGIGVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRHHKGRRIMAHP TVV+PSVSNAVPI
Subjt:  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G03341.1 unknown protein2.8e-2770.42Show/hide
Query:  VPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
        +PIC++CGT  NPCRCKVVGPTLG +AF  A +VEWPVGALVY F+H KGRRIM HPAT V+P VS ++PI
Subjt:  VPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTTGGAATCGGCGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGGTGCAAGGTGGTGGGACCGACCTTGGGGTTCTTGGCTTTCGCTGTGGC
GGCGATGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCCACCGTCGTTTTCCCGTCGGTGTCTAACG
CGGTTCCTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTTGGAATCGGCGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGGTGCAAGGTGGTGGGACCGACCTTGGGGTTCTTGGCTTTCGCTGTGGC
GGCGATGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCCACCGTCGTTTTCCCGTCGGTGTCTAACG
CGGTTCCTATTTGA
Protein sequenceShow/hide protein sequence
MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI