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Clc05G13660 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G13660
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr05:12332322..12333017
RNA-Seq ExpressionClc05G13660
SyntenyClc05G13660
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038875070.1 uncharacterized protein LOC120067596 [Benincasa hispida]1.8e-4856.84Show/hide
Query:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS---------------------------GCALNQNTIKCK------------------------------VE
        MAGN KR KHVWSKVED KLVEALLYLV                            GC LNQNTIKCK                              VE
Subjt:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS---------------------------GCALNQNTIKCK------------------------------VE

Query:  REIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLGTQDCQTPKVRQTDSPINPDGMDEETAE
        REIF+LWV+SHP+ KGMWNKSF HYDDLST+F KDRA+ QSSEDP+VMA+NAFREFEDEIRLG+QDC TP+VRQT+SP+N D +DEE AE
Subjt:  REIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLGTQDCQTPKVRQTDSPINPDGMDEETAE

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]7.6e-3950.26Show/hide
Query:  IMAGNSKRTKHVWSKVEDAKLVEALLYLVS---------------------------GCALNQNTIKCK------------------------------V
        IMAGN K++KHVWSKVEDAKLVEALLYLV                            GCALN NTI+CK                              V
Subjt:  IMAGNSKRTKHVWSKVEDAKLVEALLYLVS---------------------------GCALNQNTIKCK------------------------------V

Query:  EREIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLGTQDCQTPKVRQTDSPINPDGMDEETAEQSIG
        EREIFDLWV SHP+AK MWNK FPHYDDLSTIFGKDRA+ QSSE+P+VM                 DC TP+VRQT+SP+N D +DEE AEQS G
Subjt:  EREIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLGTQDCQTPKVRQTDSPINPDGMDEETAEQSIG

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]1.2e-3954.76Show/hide
Query:  NSKRTKHVWSKVEDAKLVEALLYLVS---------------------------GCALNQNTIKCK------------------------------VEREI
        N KR+KHVWSKVEDAK VEALLYLV                            GCALNQNTI+CK                              VEREI
Subjt:  NSKRTKHVWSKVEDAKLVEALLYLVS---------------------------GCALNQNTIKCK------------------------------VEREI

Query:  FDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLGTQDCQTPK
        FD WVRSHP+AKGMWNK FPHYDDLST+FGK +A+ QSSEDP+VM +NAFREFEDEIRLG+QDC TP+
Subjt:  FDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLGTQDCQTPK

XP_038895852.1 uncharacterized protein LOC120084021 [Benincasa hispida]3.5e-4456.67Show/hide
Query:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS---------------------------GCALNQNTIKCKVE--------------------REIFDLWVRS
        MAGN KR+KHVWSKVEDAKL+EALLYLV                             CALNQNTI+CKV                      E F   V+S
Subjt:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS---------------------------GCALNQNTIKCKVE--------------------REIFDLWVRS

Query:  HPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLGTQDCQTPKVRQTDSPINPDGMDEETAE
        HP+AKGMWNKSFPHYDDLST+FGKDRA+ QSSE+P++MA+NAFREFED+IRLG+QD  TP+VRQT SP+N DG+DEE AE
Subjt:  HPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLGTQDCQTPKVRQTDSPINPDGMDEETAE

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]1.3e-4955.67Show/hide
Query:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS---------------------------GCALNQNTIKCK------------------------------VE
        M  N KR+KH+WSKVEDAKLVEALLYLV                            GC LNQNTI+CK                              VE
Subjt:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS---------------------------GCALNQNTIKCK------------------------------VE

Query:  REIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLGTQDCQTPKVRQTDSPINPDGMDEETAEQSIG
        REIFDLWV SHP+AK MWNK FPHYDD ST+FGKDR + +SSEDP+VMA+NAFREFEDEIRLG+QDCQTP+VRQT+SP+N D +DEE AEQS G
Subjt:  REIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLGTQDCQTPKVRQTDSPINPDGMDEETAEQSIG

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.3e-1231.75Show/hide
Query:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS----------------------------GCALNQ-NTIKCKV-----------------------------
        MA  S+  KH W+K E+ K VE L+ LVS                            G  + + +TI C V                             
Subjt:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS----------------------------GCALNQ-NTIKCKV-----------------------------

Query:  ---EREIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLG-TQDCQTPKVRQTDSPINPDGM
           ER++FD W++SHP+AKG+ +KSFP+YDDLS +FGKDRA    SE    + SN    F D I LG + D   P +      ++PD M
Subjt:  ---EREIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLG-TQDCQTPKVRQTDSPINPDGM

A0A5A7TJS2 Retrotransposon protein7.7e-1331.55Show/hide
Query:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS--GCALNQNTIK---------------------------CKV-----------------------------
        M  +S+ +KH W+K E+AKLVE L+ LVS  G   N  T +                           C+V                             
Subjt:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS--GCALNQNTIK---------------------------CKV-----------------------------

Query:  ---EREIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLG-TQDCQTPKVRQTDSPINPD
           ER++FD WV+SHP+A+G+ +KSFP+YDDLS +F KDRA E   E    + SN    F D + LG + D   P +      I+PD
Subjt:  ---EREIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLG-TQDCQTPKVRQTDSPINPD

A0A5A7U0H7 Retrotransposon protein1.3e-1231.75Show/hide
Query:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS----------------------------GCALNQ-NTIKCKV-----------------------------
        MA  S+  KH W+K E+ K VE L+ LVS                            G  + + +TI C V                             
Subjt:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS----------------------------GCALNQ-NTIKCKV-----------------------------

Query:  ---EREIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLG-TQDCQTPKVRQTDSPINPDGM
           ER++FD W++SHP+AKG+ +KSFP+YDDLS +FGKDRA    SE    + SN    F D I LG + D   P +      ++PD M
Subjt:  ---EREIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLG-TQDCQTPKVRQTDSPINPDGM

A0A5D3C7T4 Uncharacterized protein3.5e-1332.1Show/hide
Query:  NSKRTKHVWSKVEDAKLVEALLYLV-------------------------------SGCALNQNTIKCKVEREIFDLWVRSHPSAKGMWNKSFPHYDDLS
        NSK TKH W+ +ED  LVE LL LV                               SG   N+     +VE+ +FD WV+ HP+A+G+ NK FP++ DL 
Subjt:  NSKRTKHVWSKVEDAKLVEALLYLV-------------------------------SGCALNQNTIKCKVEREIFDLWVRSHPSAKGMWNKSFPHYDDLS

Query:  TIFGKDRAIEQSSEDPHVMASNAFREF-EDEIRLGTQDCQTPKVRQTDSPINPDGMDEETAE
         +FG+DRA     + P  M+S   R+  ED++ +  +D   P         NP G++  + E
Subjt:  TIFGKDRAIEQSSEDPHVMASNAFREF-EDEIRLGTQDCQTPKVRQTDSPINPDGMDEETAE

A0A5D3D8J6 Retrotransposon protein2.3e-1232.34Show/hide
Query:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS--GCALNQNTIK---------------------------CKV-----------------------------
        M  +S+ +KH W+K E+AKLVE L+ LVS  G   N  T +                           C+V                             
Subjt:  MAGNSKRTKHVWSKVEDAKLVEALLYLVS--GCALNQNTIK---------------------------CKV-----------------------------

Query:  ---EREIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLG
           ER++FD WV+SHP+A+G+ +KSFP+YDDLS +F KDRA E   E    + SN    F D + LG
Subjt:  ---EREIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIRLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGCATTTAGTATAATGGCAGGTAATAGTAAGAGGACGAAGCACGTATGGTCTAAGGTGGAGGATGCTAAGTTGGTGGAAGCCCTACTTTATTTGGTGTCCGGGTG
CGCGCTTAATCAAAACACCATCAAGTGCAAGGTCGAGAGGGAGATTTTCGATCTTTGGGTTCGGAGTCATCCAAGTGCAAAGGGGATGTGGAACAAGTCGTTCCCCCATT
ACGATGACCTCTCCACTATCTTTGGGAAGGATAGAGCTATAGAGCAATCAAGTGAGGACCCACACGTGATGGCGAGTAATGCATTTAGAGAGTTTGAAGATGAGATTCGA
CTTGGAACGCAGGACTGTCAGACACCTAAGGTTCGCCAAACAGATTCACCTATAAATCCGGATGGAATGGATGAAGAGACAGCAGAGCAATCTATAGGAATTATCCTAAT
AAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATGCATTTAGTATAATGGCAGGTAATAGTAAGAGGACGAAGCACGTATGGTCTAAGGTGGAGGATGCTAAGTTGGTGGAAGCCCTACTTTATTTGGTGTCCGGGTG
CGCGCTTAATCAAAACACCATCAAGTGCAAGGTCGAGAGGGAGATTTTCGATCTTTGGGTTCGGAGTCATCCAAGTGCAAAGGGGATGTGGAACAAGTCGTTCCCCCATT
ACGATGACCTCTCCACTATCTTTGGGAAGGATAGAGCTATAGAGCAATCAAGTGAGGACCCACACGTGATGGCGAGTAATGCATTTAGAGAGTTTGAAGATGAGATTCGA
CTTGGAACGCAGGACTGTCAGACACCTAAGGTTCGCCAAACAGATTCACCTATAAATCCGGATGGAATGGATGAAGAGACAGCAGAGCAATCTATAGGAATTATCCTAAT
AAATTAA
Protein sequenceShow/hide protein sequence
MYAFSIMAGNSKRTKHVWSKVEDAKLVEALLYLVSGCALNQNTIKCKVEREIFDLWVRSHPSAKGMWNKSFPHYDDLSTIFGKDRAIEQSSEDPHVMASNAFREFEDEIR
LGTQDCQTPKVRQTDSPINPDGMDEETAEQSIGIILIN