CuGenDBv2

Gene ID	Clc05G13980
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	B3 domain-containing protein
Genome location	ClcChr05:13142584..13143295
RNA-Seq Expression	Clc05G13980
Synteny	Clc05G13980
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR003340 - B3 DNA binding domain IPR015300 - DNA-binding pseudobarrel domain superfamily IPR044837 - B3 domain-containing protein REM16-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_011650806.1 B3 domain-containing protein Os04g0386900 [Cucumis sativus]

5.1e-50

71.97

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Query:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL
        PQNGE +PL GK YH FILSKSH  PIYN+ LP KFHS+LPA++IP  +LC  K WKIDY+GNRR KALD KQW+KFVNDN LK GDA VFELLECSS++
Subjt:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL

Query:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID
        LKFRVQIL G IP +LH KFSGETK+ PI +D
Subjt:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID

XP_022941967.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata]

3.5e-51

72.73

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Query:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL
        PQN  ILPL GK YH  ILSKSH  PI N+ LP KFHSVLPA+MIP  + C  K WKIDYYGNRR KALD KQW+KFVNDN LKCGDACVFEL+ECSS++
Subjt:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL

Query:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID
        +KFRVQILRG IPF+LH KFSGE+++ PI+ID
Subjt:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID

XP_022974195.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima]

2.1e-51

73.48

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Query:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL
        PQN  ILPL GK YH  ILSKSH  PI N+ LP KFHSVLPA+MIP  + C  K WKIDYYGNRR KALD KQW+KFVNDN LKCGDACVFEL+ECSS++
Subjt:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL

Query:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID
        LKFRVQILRG IPF+LH KFSGE+++ PI+ID
Subjt:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID

XP_023539026.1 B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo]

6.1e-51

71.97

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Query:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL
        PQN  ILPL GK YH  ILSKSH  PI N+ +P KFHSVLPA+MIP  + C  K WKIDYYGNRR KALD KQW+KFVNDN LKCGDACVFEL+ECSS++
Subjt:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL

Query:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID
        +KFRVQILRG IPF+LH KFSGE+++ PI+ID
Subjt:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID

XP_038903804.1 B3 domain-containing protein Os04g0386900-like [Benincasa hispida]

4.6e-51

72.73

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Query:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL
        PQ+GEILPL GK YH FILSKSH  PI ++ LP KFHS+LPA++IP  + C  K W IDYYGNRR KALD KQW+KFVNDN LK GDACVFEL+ECSS++
Subjt:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL

Query:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID
        LKFRVQILRG IPFQLH KFSGETKD PI ++
Subjt:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3V3 TF-B3 domain-containing protein

2.5e-50

71.97

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Query:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL
        PQNGE +PL GK YH FILSKSH  PIYN+ LP KFHS+LPA++IP  +LC  K WKIDY+GNRR KALD KQW+KFVNDN LK GDA VFELLECSS++
Subjt:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL

Query:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID
        LKFRVQIL G IP +LH KFSGETK+ PI +D
Subjt:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID

A0A5D3CJR1 B3 domain-containing protein

1.7e-43

84.38

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Query:  HSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKFSGETKDIPIIID
        +SVLP +MIPTAI CGEKVWK++YYGNRRSKAL+ KQWKKFVNDNGLKCGD CVFELLEC+++LLKFRVQILRGHIPFQLHHKF+GETKD PI+ID
Subjt:  HSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKFSGETKDIPIIID

A0A6J1D033 B3 domain-containing protein Os04g0386900-like

4.8e-46

67.42

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Query:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL
        P+N EI PL  K +H  IL+KSH  PIYN+ LP KFHSVLPA++I   + CG K W +DYYGNRR K+LD + W+KFVNDN LK GDACVFEL+ECSS+ 
Subjt:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL

Query:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID
        LKFRVQILRG IP QLH KFSGE+KD PI ID
Subjt:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID

A0A6J1FTK2 B3 domain-containing protein Os04g0386900-like

1.7e-51

72.73

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Query:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL
        PQN  ILPL GK YH  ILSKSH  PI N+ LP KFHSVLPA+MIP  + C  K WKIDYYGNRR KALD KQW+KFVNDN LKCGDACVFEL+ECSS++
Subjt:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL

Query:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID
        +KFRVQILRG IPF+LH KFSGE+++ PI+ID
Subjt:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID

A0A6J1IDC2 B3 domain-containing protein Os04g0386900-like

1.0e-51

73.48

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Query:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL
        PQN  ILPL GK YH  ILSKSH  PI N+ LP KFHSVLPA+MIP  + C  K WKIDYYGNRR KALD KQW+KFVNDN LKCGDACVFEL+ECSS++
Subjt:  PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTL

Query:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID
        LKFRVQILRG IPF+LH KFSGE+++ PI+ID
Subjt:  LKFRVQILRGHIPFQLHHKFSGETKDIPIIID

SwissProt top hits

e value

%identity

Alignment

Q7XLP4 B3 domain-containing protein Os04g0386900

9.2e-18

36.92

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Query:  ILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELL---ECSSTLLK
        +LPLLGK Y   I+ KSH  P + + +P  F  +LP+   P  +    + W + + G R  + L+   W+ F  DN L+ GD CVFELL         ++
Subjt:  ILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELL---ECSSTLLK

Query:  FRVQILRGHIPFQLHHKFSGETKDIPIIID
        FRVQ+LR  IP ++  +  G T   PI+ID
Subjt:  FRVQILRGHIPFQLHHKFSGETKDIPIIID

Q9LHY9 B3 domain-containing protein Os06g0112300

2.0e-12

36.29

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Query:  GKLYHPFILSKSHAPPIYNICLPTKFHSVL--PALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSST-LLKFRVQI
        G  +   +++KSH  P + + +P +F   L  P       +  G K W   Y G+ + K LD   W +F  DN L  GDACVFEL+   +   L+F+VQI
Subjt:  GKLYHPFILSKSHAPPIYNICLPTKFHSVL--PALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSST-LLKFRVQI

Query:  LRGHIPFQLHHKFSGETKDIPIII
        LRG +P ++     G T D PI+I
Subjt:  LRGHIPFQLHHKFSGETKDIPIII

Arabidopsis top hits

e value

%identity

Alignment

AT4G33280.1 AP2/B3-like transcriptional factor family protein

9.1e-05

42.59

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Query:  KIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRG
        K + +G R S  +    WKKFV DN L+ GD CVFE     +  L   V I RG
Subjt:  KIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRG

Sequences

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CDS sequence

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ATGGAGCCGCCGCAAAATGGTGAAATTTTGCCACTTTTAGGCAAACTCTACCATCCTTTTATTCTTTCTAAATCGCATGCCCCTCCCATTTACAATATTTGTTTGCCAAC
AAAATTTCACTCTGTTTTACCTGCTCTTATGATCCCTACGGCTATTTTGTGTGGGGAAAAGGTATGGAAGATAGATTATTATGGGAACAGACGCAGTAAAGCACTTGATC
CCAAACAATGGAAGAAGTTTGTTAATGATAATGGTTTAAAGTGTGGAGATGCTTGCGTATTTGAGCTCTTGGAATGTAGCAGCACTTTACTCAAATTCAGAGTTCAAATT
CTTAGAGGTCACATCCCTTTCCAGCTGCACCACAAGTTCAGTGGAGAAACTAAGGACATCCCTATAATTATCGACTAG

mRNA sequence

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Protein sequence

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MEPPQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQI
LRGHIPFQLHHKFSGETKDIPIIID

Clc05G13980 (gene) of Watermelon (cordophanus) v2 genome