CuGenDBv2

Gene ID	Clc05G14355
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Pentatricopeptide repeat-containing protein
Genome location	ClcChr05:14455034..14456005
RNA-Seq Expression	Clc05G14355
Synteny	Clc05G14355
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR002885 - Pentatricopeptide repeat IPR011990 - Tetratricopeptide-like helical domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581225.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.9e-08

30.46

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Query:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------
        T VGMHK GV++DE+V V+A +AC NL IVN+ KL H                                                               
Subjt:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------

Query:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR
                            YAQHD  YE  TLFQEM MNG +P+ET LV+VIS C      EQGK +++ I++
Subjt:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR

KAG7017956.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-08

30.46

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Query:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------
        T VGMHK GV++DE+V V+A +AC NL IVN+ KL H                                                               
Subjt:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------

Query:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR
                            YAQHD  YE  TLFQEM MNG +P+ET LV+VIS C      EQGK +++ I++
Subjt:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR

XP_022152191.1 pentatricopeptide repeat-containing protein At3g62890 [Momordica charantia]

8.9e-10

32.76

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Query:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------
        T VGMHK GV++DE+V V+A +AC NL IVN+ KL H                                                               
Subjt:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------

Query:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR
                            YAQHD  YE  TLFQEM MNGLKP+ET+LV+VIS CA     EQGK I++ I++
Subjt:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR

XP_022934101.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucurbita moschata]

2.2e-08

31.03

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Query:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------
        T VGMHK GV++DE+V V+A +AC NL IVN+ KL H                                                               
Subjt:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------

Query:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR
                            YAQHD  YE  TLFQEM MNG KP+ET LV+VIS C      EQGK +++ I++
Subjt:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR

XP_022983674.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucurbita maxima]

1.7e-08

31.03

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Query:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------
        T VGMHK GV++DE+V V+A +AC NL IVN+ KL H                                                               
Subjt:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------

Query:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR
                            YAQHD  YE  TLFQEM MNG KP+ET LV+VIS C      EQGK +++ I++
Subjt:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E1G8 pentatricopeptide repeat-containing protein At3g62890-like

6.4e-06

28.74

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Query:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------
        T VGMHK GV++DE+V V+A +AC +L IVN+ KL H                                                               
Subjt:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------

Query:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR
                            YAQHD   E+  LFQEM M+G KP+E  LV+VIS CA     EQGK +++ I++
Subjt:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR

A0A5D3BTR2 Pentatricopeptide repeat-containing protein

6.4e-06

28.74

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Query:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------
        T VGMHK GV++DE+V V+A +AC +L IVN+ KL H                                                               
Subjt:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------

Query:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR
                            YAQHD   E+  LFQEM M+G KP+E  LV+VIS CA     EQGK +++ I++
Subjt:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR

A0A6J1DFB5 pentatricopeptide repeat-containing protein At3g62890

4.3e-10

32.76

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Query:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------
        T VGMHK GV++DE+V V+A +AC NL IVN+ KL H                                                               
Subjt:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------

Query:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR
                            YAQHD  YE  TLFQEM MNGLKP+ET+LV+VIS CA     EQGK I++ I++
Subjt:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR

A0A6J1F0X4 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like

1.1e-08

31.03

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Query:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------
        T VGMHK GV++DE+V V+A +AC NL IVN+ KL H                                                               
Subjt:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------

Query:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR
                            YAQHD  YE  TLFQEM MNG KP+ET LV+VIS C      EQGK +++ I++
Subjt:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR

A0A6J1J842 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like

8.1e-09

31.03

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Query:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------
        T VGMHK GV++DE+V V+A +AC NL IVN+ KL H                                                               
Subjt:  TLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHK--------------------------------------------------------------

Query:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR
                            YAQHD  YE  TLFQEM MNG KP+ET LV+VIS C      EQGK +++ I++
Subjt:  --------------------YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCA-----EQGKCIYSCIRR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G23330.1 Tetratricopeptide repeat (TPR)-like superfamily protein

6.0e-04

42.5

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Query:  YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCAEQG
        +A H H +EA +LF+EM   G+KPN+   V V++ C+  G
Subjt:  YAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCAEQG

AT5G61800.1 Pentatricopeptide repeat (PPR) superfamily protein

4.6e-04

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Query:  IVNVEKLFHKYAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCAEQG
        +V+   L   YAQ +H  EA  LF EM   GLKP+   +V+ +S CA+ G
Subjt:  IVNVEKLFHKYAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCAEQG

Sequences

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CDS sequence

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ATGAATTTCTTTCGATTGAACTTGCTTTCTTTTGCTTTGAATCTTTGCAGATTGATGTTATTGCAGAATACGTCTCCTGGTAATGAAACCCATAAGCTTTGTTCTAATCG
TTTGTTTGAATGGGAAGGAAAAACAGGTATAACATTGGTTGGAATGCATAAAACTGGAGTTGTGATGGATGAGATTGTAGTAGTTACTGCTCGAAATGCTTGTATAAATT
TACAGATCGTTAATGTGGAGAAATTATTTCATAAATATGCCCAACATGACCATTCTTACGAGGCTCGTACACTTTTTCAAGAAATGCATATGAATGGCCTAAAACCGAAT
GAGACCATATTAGTAAATGTAATATCTCTGTGCGCTGAGCAGGGGAAATGCATTTATTCTTGTATTAGACGAATTTTCTAA

mRNA sequence

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Protein sequence

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MNFFRLNLLSFALNLCRLMLLQNTSPGNETHKLCSNRLFEWEGKTGITLVGMHKTGVVMDEIVVVTARNACINLQIVNVEKLFHKYAQHDHSYEARTLFQEMHMNGLKPN
ETILVNVISLCAEQGKCIYSCIRRIF

Clc05G14355 (gene) of Watermelon (cordophanus) v2 genome