; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G14520 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G14520
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionmediator of RNA polymerase II transcription subunit 23
Genome locationClcChr05:14821929..14823678
RNA-Seq ExpressionClc05G14520
SyntenyClc05G14520
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579266.1 Mediator of RNA polymerase II transcription subunit 23, partial [Cucurbita argyrosperma subsp. sororia]1.5e-0676.32Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
KAG7016782.1 Mediator of RNA polymerase II transcription subunit 23 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-0676.32Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
XP_022938601.1 mediator of RNA polymerase II transcription subunit 23 [Cucurbita moschata]1.5e-0676.32Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
XP_022973546.1 mediator of RNA polymerase II transcription subunit 23 [Cucurbita maxima]1.5e-0676.32Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
XP_023551559.1 mediator of RNA polymerase II transcription subunit 23 [Cucurbita pepo subsp. pepo]1.5e-0676.32Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
TrEMBL top hitse value%identityAlignment
A0A0A0KPD2 Uncharacterized protein4.7e-0671.05Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C+++MNWL+S G  ELSS QNLQTNERI+
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
A0A5A7TSF1 Mediator of RNA polymerase II transcription subunit 23 isoform X14.7e-0671.05Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C+++MNWL+S G  ELSS QNLQTNERI+
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
A0A6J1CXU7 mediator of RNA polymerase II transcription subunit 231.6e-0673.68Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C+++MNWLSS GV ELSS QNLQTNER++
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
A0A6J1FDL6 mediator of RNA polymerase II transcription subunit 237.2e-0776.32Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
A0A6J1I8Y2 mediator of RNA polymerase II transcription subunit 237.2e-0776.32Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
SwissProt top hitse value%identityAlignment
F4I4P3 Mediator of RNA polymerase II transcription subunit 239.4e-0452.63Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C++++NWLSS G+ EL     LQ N+R++
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
Arabidopsis top hitse value%identityAlignment
AT1G23230.1 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).6.7e-0552.63Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C++++NWLSS G+ EL     LQ N+R++
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
AT1G23230.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629).6.7e-0552.63Show/hide
Query:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV
        +SYTMAQP C++++NWLSS G+ EL     LQ N+R++
Subjt:  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGCATCTGCGCTTATTATATAGATATAGATAAAGAGCAAGGGAAAGCGGTTCTTCCAATAGCACAAACCCGTGCACTCATTTTTATAATGCAAGGTTTG
CTATATTATGCTTTCAGGACAATATTGTCCTACAATTTTCTGCAGAAGTCAATAAAGGGAAGTGGGAAACTTGTTCCTCAAGTTGTTAAGATTTGGGTGGAGAGA
AACTTCAAAGATAATCTCGATCATTATGGATCATTATCATACACCATGGCACAACCAGAATGTAAATCTTTGATGAACTGGTTATCTTCTGTTGGGGTTCTAGAA
CTATCATCAGTGCAAAATTTACAAACCAATGAGAGGATAGTAAAAGGTATGCCATATATGACATCGGAGCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGCATCTGCGCTTATTATATAGATATAGATAAAGAGCAAGGGAAAGCGGTTCTTCCAATAGCACAAACCCGTGCACTCATTTTTATAATGCAAGGTTTG
CTATATTATGCTTTCAGGACAATATTGTCCTACAATTTTCTGCAGAAGTCAATAAAGGGAAGTGGGAAACTTGTTCCTCAAGTTGTTAAGATTTGGGTGGAGAGA
AACTTCAAAGATAATCTCGATCATTATGGATCATTATCATACACCATGGCACAACCAGAATGTAAATCTTTGATGAACTGGTTATCTTCTGTTGGGGTTCTAGAA
CTATCATCAGTGCAAAATTTACAAACCAATGAGAGGATAGTAAAAGGTATGCCATATATGACATCGGAGCGTTAA
Protein sequenceShow/hide protein sequence
MKSICAYYIDIDKEQGKAVLPIAQTRALIFIMQGLLYYAFRTILSYNFLQKSIKGSGKLVPQVVKIWVERNFKDNLDHYGSLSYTMAQPECKSLMNWLSSVGVLE
LSSVQNLQTNERIVKGMPYMTSER