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Clc05G14535 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G14535
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibonuclease H-like superfamily protein
Genome locationClcChr05:14848290..14852856
RNA-Seq ExpressionClc05G14535
SyntenyClc05G14535
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein2.7e-0429.55Show/hide
Query:  ILHVNATCKMRFPVVGFGAVIGSSSRS--MMASMHGFQKLSLTPTGAEALAIYEGLRLMVRLELSHMLVLFDSLVVIQMLRG-----------VRRVQIA
        + +V+A  + +  + G G V  ++S S   + +     +   +P  AEA AI   +   ++LE S +LVL DS  ++  L             V    I 
Subjt:  ILHVNATCKMRFPVVGFGAVIGSSSRS--MMASMHGFQKLSLTPTGAEALAIYEGLRLMVRLELSHMLVLFDSLVVIQMLRG-----------VRRVQIA

Query:  ASFRSVVFQYVPRLSNSVADELAR-TRCIGSS
          FRS+ FQ++PRL NS+AD  A+ + CI  +
Subjt:  ASFRSVVFQYVPRLSNSVADELAR-TRCIGSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATGTACCTTCTTATTCGGAGGAACTTGGGATTGTATTGAACGAACAATTTATCTCTAATTTAGGCTTCCCAGTATATGACATCTCTTATCGTCAGTTAAGTAT
ATTACATGTTAATGCAACGTGCAAAATGAGATTTCCAGTGGTGGGCTTTGGAGCGGTAATTGGGTCCTCTTCAAGATCTATGATGGCTTCTATGCATGGTTTTCAAAAGT
TATCTTTGACCCCAACAGGTGCTGAAGCGTTGGCTATTTATGAGGGTCTAAGATTGATGGTTAGATTGGAGTTATCTCATATGTTGGTGTTGTTTGATTCTTTAGTGGTT
ATTCAAATGCTCAGAGGCGTGAGGAGAGTCCAAATTGCAGCTTCTTTCCGGTCTGTGGTGTTCCAATATGTGCCTCGTTTGTCAAATTCAGTGGCTGATGAGTTGGCAAG
GACGAGATGTATTGGGTCAAGTGCTTTCACTTGTTGTCGTCACCCATCTCCACCTCTTCTTTGTGAAGCCCTAGATCTACTGCTACGTCTTCACCTTAGTCACCTTGCTC
GTCGTTGCCAACTCATCGTCCTACTTATCGTGTCAACAGTTGGGTCCGTGCACTATAATCGATTGTCATTGTCCAAAACTCCGCACTACTCAAATTCACCGTGCCCCAAT
GCTATTGTCCAGAAACCCGCATCGTCAACCTTCGTCATCCTTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATGTACCTTCTTATTCGGAGGAACTTGGGATTGTATTGAACGAACAATTTATCTCTAATTTAGGCTTCCCAGTATATGACATCTCTTATCGTCAGTTAAGTAT
ATTACATGTTAATGCAACGTGCAAAATGAGATTTCCAGTGGTGGGCTTTGGAGCGGTAATTGGGTCCTCTTCAAGATCTATGATGGCTTCTATGCATGGTTTTCAAAAGT
TATCTTTGACCCCAACAGGTGCTGAAGCGTTGGCTATTTATGAGGGTCTAAGATTGATGGTTAGATTGGAGTTATCTCATATGTTGGTGTTGTTTGATTCTTTAGTGGTT
ATTCAAATGCTCAGAGGCGTGAGGAGAGTCCAAATTGCAGCTTCTTTCCGGTCTGTGGTGTTCCAATATGTGCCTCGTTTGTCAAATTCAGTGGCTGATGAGTTGGCAAG
GACGAGATGTATTGGGTCAAGTGCTTTCACTTGTTGTCGTCACCCATCTCCACCTCTTCTTTGTGAAGCCCTAGATCTACTGCTACGTCTTCACCTTAGTCACCTTGCTC
GTCGTTGCCAACTCATCGTCCTACTTATCGTGTCAACAGTTGGGTCCGTGCACTATAATCGATTGTCATTGTCCAAAACTCCGCACTACTCAAATTCACCGTGCCCCAAT
GCTATTGTCCAGAAACCCGCATCGTCAACCTTCGTCATCCTTCCTTGA
Protein sequenceShow/hide protein sequence
MEDVPSYSEELGIVLNEQFISNLGFPVYDISYRQLSILHVNATCKMRFPVVGFGAVIGSSSRSMMASMHGFQKLSLTPTGAEALAIYEGLRLMVRLELSHMLVLFDSLVV
IQMLRGVRRVQIAASFRSVVFQYVPRLSNSVADELARTRCIGSSAFTCCRHPSPPLLCEALDLLLRLHLSHLARRCQLIVLLIVSTVGSVHYNRLSLSKTPHYSNSPCPN
AIVQKPASSTFVILP