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Clc05G14920 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G14920
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionlight-regulated protein-like
Genome locationClcChr05:16397497..16400588
RNA-Seq ExpressionClc05G14920
SyntenyClc05G14920
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACV88397.1 GA-like protein, partial [Cucumis sativus]8.8e-4880.29Show/hide
Query:  VLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEAC-WANVFPEVRL-PLPLNNQRPTIALE
        VLSIAVP LLP STLS+N PS FPLI+F+SHSS RRS+IKATASVV DTS+VDYSSAISVF AEACETIGGEAC W N+FPEVRL    LNNQ P  + E
Subjt:  VLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEAC-WANVFPEVRL-PLPLNNQRPTIALE

Query:  EIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
        EIDREYLDYADSKTVF GEACDDLGGEFCEPEFL+ V
Subjt:  EIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
KAA0066931.1 light-regulated protein isoform X2 [Cucumis melo var. makuwa]3.1e-4580Show/hide
Query:  AVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEA-CWANVFPEVRL-PLPLNNQRPTIA-
        AVLSIAVP LLP STLSN++ S FP I+F S+SS RRSAIKATASVV DTS+VDYSSAISVF AEACETIGGEA CWAN+FPEVRL P   NNQ P +A 
Subjt:  AVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEA-CWANVFPEVRL-PLPLNNQRPTIA-

Query:  LEEIDREYLDY-ADSKTVFRGEACDDLGGEFCEPEFLSAV
        LEEIDREYLDY ADSKTVFRGEACDDLGGEFCE EFL+ V
Subjt:  LEEIDREYLDY-ADSKTVFRGEACDDLGGEFCEPEFLSAV
KAE8650797.1 hypothetical protein Csa_017474 [Cucumis sativus]8.0e-4980.58Show/hide
Query:  QAVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEAC-WANVFPEVRL-PLPLNNQRPTIA
        QAVLSIAVP LLP STLS+N PS FPLI+F+SHSS RRS+IKATASVV DTS+VDYSSAISVF AEACETIGGEAC W N+FPEVRL    LNNQ P  +
Subjt:  QAVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEAC-WANVFPEVRL-PLPLNNQRPTIA

Query:  LEEIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
         EEIDREYLDYADSKTVF GEACDDLGGEFCEPEFL+ V
Subjt:  LEEIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
XP_004145699.2 light-regulated protein, chloroplastic [Cucumis sativus]8.5e-5179.45Show/hide
Query:  YFIKIKMQAVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEAC-WANVFPEVRL-PLPLN
        + IKI MQAVLSIAVP LLP STLS+N PS FPLI+F+SHSS RRS+IKATASVV DTS+VDYSSAISVF AEACETIGGEAC W N+FPEVRL    LN
Subjt:  YFIKIKMQAVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEAC-WANVFPEVRL-PLPLN

Query:  NQRPTIALEEIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
        NQ P  + EEIDREYLDYADSKTVF GEACDDLGGEFCEPEFL+ V
Subjt:  NQRPTIALEEIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
XP_038893926.1 light-regulated protein, chloroplastic-like [Benincasa hispida]1.2e-5786.86Show/hide
Query:  MQAVLSIAVPPLLPSTLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEACWANVFPEVRLPLPLNNQRPTIALE
        MQAVLSIAVPPLLPSTLSNNNPSQFPLISF+SH S RRSAIKATASVV D SIVDYSSAISVF AEACETIGGEACWAN+FPEVR+   LNNQ+P +ALE
Subjt:  MQAVLSIAVPPLLPSTLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEACWANVFPEVRLPLPLNNQRPTIALE

Query:  EIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
        EIDREYLDYADS+TVF GEACDDLGGEFCEPEFL++V
Subjt:  EIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
TrEMBL top hitse value%identityAlignment
A0A0A0L8G9 Uncharacterized protein4.1e-5179.45Show/hide
Query:  YFIKIKMQAVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEAC-WANVFPEVRL-PLPLN
        + IKI MQAVLSIAVP LLP STLS+N PS FPLI+F+SHSS RRS+IKATASVV DTS+VDYSSAISVF AEACETIGGEAC W N+FPEVRL    LN
Subjt:  YFIKIKMQAVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEAC-WANVFPEVRL-PLPLN

Query:  NQRPTIALEEIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
        NQ P  + EEIDREYLDYADSKTVF GEACDDLGGEFCEPEFL+ V
Subjt:  NQRPTIALEEIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
A0A1S3BND3 light-regulated protein isoform X27.5e-4571.7Show/hide
Query:  LNSILKSLLTTYFIKIKMQAVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEA-CWANVF
        + S+  S    +  + K  AVLSIAVP LLP STLSN++ S FP I+F S+SS R SAIKATASVV DTS+VDYSSAISVF AEACETIGGEA CWAN+F
Subjt:  LNSILKSLLTTYFIKIKMQAVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEA-CWANVF

Query:  PEVRL-PLPLNNQRPTIA-LEEIDREYLDY-ADSKTVFRGEACDDLGGEFCEPEFLSAV
        PEVRL P   NNQ P +A LEEIDREYLDY ADSKTVFRGEACDDLGGEFCE EFL+ V
Subjt:  PEVRL-PLPLNNQRPTIA-LEEIDREYLDY-ADSKTVFRGEACDDLGGEFCEPEFLSAV
A0A1S4DXW1 light-regulated protein isoform X39.8e-4579.29Show/hide
Query:  AVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEA-CWANVFPEVRL-PLPLNNQRPTIA-
        AVLSIAVP LLP STLSN++ S FP I+F S+SS R SAIKATASVV DTS+VDYSSAISVF AEACETIGGEA CWAN+FPEVRL P   NNQ P +A 
Subjt:  AVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEA-CWANVFPEVRL-PLPLNNQRPTIA-

Query:  LEEIDREYLDY-ADSKTVFRGEACDDLGGEFCEPEFLSAV
        LEEIDREYLDY ADSKTVFRGEACDDLGGEFCE EFL+ V
Subjt:  LEEIDREYLDY-ADSKTVFRGEACDDLGGEFCEPEFLSAV
A0A5A7VMP8 Light-regulated protein isoform X21.5e-4580Show/hide
Query:  AVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEA-CWANVFPEVRL-PLPLNNQRPTIA-
        AVLSIAVP LLP STLSN++ S FP I+F S+SS RRSAIKATASVV DTS+VDYSSAISVF AEACETIGGEA CWAN+FPEVRL P   NNQ P +A 
Subjt:  AVLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEA-CWANVFPEVRL-PLPLNNQRPTIA-

Query:  LEEIDREYLDY-ADSKTVFRGEACDDLGGEFCEPEFLSAV
        LEEIDREYLDY ADSKTVFRGEACDDLGGEFCE EFL+ V
Subjt:  LEEIDREYLDY-ADSKTVFRGEACDDLGGEFCEPEFLSAV
C9E9F1 GA-like protein (Fragment)4.3e-4880.29Show/hide
Query:  VLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEAC-WANVFPEVRL-PLPLNNQRPTIALE
        VLSIAVP LLP STLS+N PS FPLI+F+SHSS RRS+IKATASVV DTS+VDYSSAISVF AEACETIGGEAC W N+FPEVRL    LNNQ P  + E
Subjt:  VLSIAVPPLLP-STLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSSAISVFGAEACETIGGEAC-WANVFPEVRL-PLPLNNQRPTIALE

Query:  EIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
        EIDREYLDYADSKTVF GEACDDLGGEFCEPEFL+ V
Subjt:  EIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAV
SwissProt top hitse value%identityAlignment
Q03200 Light-regulated protein, chloroplastic1.3e-1750.52Show/hide
Query:  RRSAIK---ATASVVDDTSIVDYSSAISVFGAEACETIGGEACWANVFPEVRLPLPLNNQRPTIALEEIDREYLDYADSKTVFRGEACDDLGGEFCE
        RR A++   A A+V  + + VDYSS ISVF  EAC+ IGGEAC   ++PE +L           A EE+DR+YL Y +  TVF  EACDDLGGEFC+
Subjt:  RRSAIK---ATASVVDDTSIVDYSSAISVFGAEACETIGGEACWANVFPEVRLPLPLNNQRPTIALEEIDREYLDYADSKTVFRGEACDDLGGEFCE
Q96500 Light-regulated protein 1, chloroplastic5.1e-2248.2Show/hide
Query:  MQAVLSIAVPPLLPSTLSNNNPSQFPLISFASHSSR----RRSAIKATASVVDDTSIVDYSSAI-SVFGAEACETIGGEACWANVFPEVRLPL-PLNNQR
        MQ  L I    LLP   S ++P    L+  A+ +SR    R +   +++S+  D + VDY+S+I SVF AEACE I G AC A+++PEV+L   P++  R
Subjt:  MQAVLSIAVPPLLPSTLSNNNPSQFPLISFASHSSR----RRSAIKATASVVDDTSIVDYSSAI-SVFGAEACETIGGEACWANVFPEVRLPL-PLNNQR

Query:  PTIALEEIDREYLDYADSKTVFRGEACDDLGGEFCEPEF
        P +A E +DREY +Y   KTVFR EACDDLGGEFCEP+F
Subjt:  PTIALEEIDREYLDYADSKTVFRGEACDDLGGEFCEPEF
Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like3.6e-2348.2Show/hide
Query:  MQAVLSIAVPPLLPSTLSNNNPSQFPLISFASHSSR----RRSAIKATASVVDDTSIVDYSSAI-SVFGAEACETIGGEACWANVFPEVRLPL-PLNNQR
        MQ  L I    LLP   S ++P    L+  A+ +SR    R +   +++S+  D + VDY+S+I SVF AEACE I G AC A+++PEV+L   P++  R
Subjt:  MQAVLSIAVPPLLPSTLSNNNPSQFPLISFASHSSR----RRSAIKATASVVDDTSIVDYSSAI-SVFGAEACETIGGEACWANVFPEVRLPL-PLNNQR

Query:  PTIALEEIDREYLDYADSKTVFRGEACDDLGGEFCEPEF
        P +A E +DREY +Y   KTVFR EACDDLGGEFCEP+F
Subjt:  PTIALEEIDREYLDYADSKTVFRGEACDDLGGEFCEPEF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATCAGAGGAAGAGGAAGCAAAGGAATCTTATCTAGAGGGACACCCTCCAATGTATGTTATACTGTTCTATATAAAGGGCTAATTAGTAACTTGCATATACTCAA
TTCAATTCTCAAAAGCTTATTAACAACATATTTCATCAAAATCAAAATGCAGGCTGTTCTTAGCATTGCTGTTCCTCCCCTTCTCCCCTCAACACTTTCCAATAATAACC
CTTCTCAGTTTCCTTTGATCTCATTTGCTTCTCACTCCTCGCGACGACGCTCGGCCATCAAAGCAACCGCCTCGGTCGTCGACGACACATCGATTGTCGATTATAGTTCT
GCTATCTCAGTGTTTGGTGCAGAAGCATGTGAGACAATTGGTGGAGAAGCATGTTGGGCAAATGTGTTTCCAGAAGTAAGGCTTCCGCTTCCACTTAACAATCAAAGGCC
CACCATTGCCTTGGAGGAGATCGATAGAGAATATCTTGATTATGCCGATTCAAAGACTGTTTTCCGAGGAGAGGCTTGCGATGATCTTGGTGGAGAGTTCTGTGAACCCG
AGTTTCTAAGTGCCGTTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGAACATCAGAGGAAGAGGAAGCAAAGGAATCTTATCTAGAGGGACACCCTCCAATGTATGTTATACTGTTCTATATAAAGGGCTAATTAGTAACTTGCATATACTCAA
TTCAATTCTCAAAAGCTTATTAACAACATATTTCATCAAAATCAAAATGCAGGCTGTTCTTAGCATTGCTGTTCCTCCCCTTCTCCCCTCAACACTTTCCAATAATAACC
CTTCTCAGTTTCCTTTGATCTCATTTGCTTCTCACTCCTCGCGACGACGCTCGGCCATCAAAGCAACCGCCTCGGTCGTCGACGACACATCGATTGTCGATTATAGTTCT
GCTATCTCAGTGTTTGGTGCAGAAGCATGTGAGACAATTGGTGGAGAAGCATGTTGGGCAAATGTGTTTCCAGAAGTAAGGCTTCCGCTTCCACTTAACAATCAAAGGCC
CACCATTGCCTTGGAGGAGATCGATAGAGAATATCTTGATTATGCCGATTCAAAGACTGTTTTCCGAGGAGAGGCTTGCGATGATCTTGGTGGAGAGTTCTGTGAACCCG
AGTTTCTAAGTGCCGTTTTATAG
Protein sequenceShow/hide protein sequence
MNIRGRGSKGILSRGTPSNVCYTVLYKGLISNLHILNSILKSLLTTYFIKIKMQAVLSIAVPPLLPSTLSNNNPSQFPLISFASHSSRRRSAIKATASVVDDTSIVDYSS
AISVFGAEACETIGGEACWANVFPEVRLPLPLNNQRPTIALEEIDREYLDYADSKTVFRGEACDDLGGEFCEPEFLSAVL