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Clc05G14960 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G14960
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr05:16636297..16636611
RNA-Seq ExpressionClc05G14960
SyntenyClc05G14960
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8021266.1 hypothetical protein FH972_007173 [Carpinus fangiana]6.4e-0845.1Show/hide
Query:  TAVCFCVALSLATFFAL----SPVAVSSISASPPVSPHRTYQNMSSFFPSVDEHSSPISADP------ASAPGSGEFMGKSGSSDVKLNHGVSAFGLSIC
        T+  FC ALS+A FFA+    S     +ISASP V+P+ T  NMSSFFPS  +   P SA P      A  P SGEF+GKS S+ V+   G++  G+ + 
Subjt:  TAVCFCVALSLATFFAL----SPVAVSSISASPPVSPHRTYQNMSSFFPSVDEHSSPISADP------ASAPGSGEFMGKSGSSDVKLNHGVSAFGLSIC

Query:  SL
        SL
Subjt:  SL

KAF5479257.1 hypothetical protein F2P56_000093, partial [Juglans regia]1.2e-0644.14Show/hide
Query:  TAVCFCVALSLATFFALS--PVAVS--SISASPPVSPHRTYQNMSSFFPSVDEHSSPISADP------ASAPGSGEFMGKSGSSDVKLNHGVSAFGLSIC
        T   FC ALS+A  FA+S  P + S  +ISASP V P+ T  NMSSFFPS      P SA P      A  P SGEF+GKS S   +L+ G    G  + 
Subjt:  TAVCFCVALSLATFFALS--PVAVS--SISASPPVSPHRTYQNMSSFFPSVDEHSSPISADP------ASAPGSGEFMGKSGSSDVKLNHGVSAFGLSIC

Query:  SLFSLRVFLSV
        S+F  R+   V
Subjt:  SLFSLRVFLSV

KAG6621778.1 hypothetical protein I3842_Q002500 [Carya illinoinensis]3.5e-0641.44Show/hide
Query:  TAVCFCVALSLATFFALSPVAVS----SISASPPVSPHRTYQNMSSFFPSVDEHSSPISADP------ASAPGSGEFMGKSGSSDVKLNHGVSAFGLSIC
        T   FC A+S+A  FA+S    S    +ISASP V P+ T  NMSSFFPS      P S  P      A  P SGEF+GKS S   +L+ G+   G  + 
Subjt:  TAVCFCVALSLATFFALSPVAVS----SISASPPVSPHRTYQNMSSFFPSVDEHSSPISADP------ASAPGSGEFMGKSGSSDVKLNHGVSAFGLSIC

Query:  SLFSLRVFLSV
        S+F   + L V
Subjt:  SLFSLRVFLSV

XP_022934640.1 uncharacterized protein LOC111441775 [Cucurbita moschata]2.3e-2674.31Show/hide
Query:  MATTAVC-FCVALSLATFFALSPVAVSSISASPPVSPHRTYQNMSSFFPS-VDEHSSPISADPASAPG--SGEFMGK-SGSSDVKLNHGVSAFGLSICSL
        MAT A   FCVALSLA FFA+SP AVS+ISASPPV PHR  QNMSSFFPS VD  SSPISA PA A    SGEF+GK SGS+ VKLNHG+SAFGLSICS+
Subjt:  MATTAVC-FCVALSLATFFALSPVAVSSISASPPVSPHRTYQNMSSFFPS-VDEHSSPISADPASAPG--SGEFMGK-SGSSDVKLNHGVSAFGLSICSL

Query:  FSLRVFLSV
        FSLR+FL+V
Subjt:  FSLRVFLSV

XP_022983589.1 uncharacterized protein LOC111482150 [Cucurbita maxima]1.7e-2473.33Show/hide
Query:  ATTAVCFCVALSLATFFALSPVAVSSISASPPVSPHRTYQNMSSFFPS-VDEHSSPISADPASAPGSGEFMGK-SGSSDVKLNHGVSAFGLSICSLFSLR
        A  A  FCVALSLAT FALSP AVS+ISASPPV PHR  QNMSSFFPS VD  SSPISA PA    SGEF+GK SGS+ VKLNHG+SAFGLSICS+F LR
Subjt:  ATTAVCFCVALSLATFFALSPVAVSSISASPPVSPHRTYQNMSSFFPS-VDEHSSPISADPASAPGSGEFMGK-SGSSDVKLNHGVSAFGLSICSLFSLR

Query:  VFLSV
        + L+V
Subjt:  VFLSV

TrEMBL top hitse value%identityAlignment
A0A2N9I0C8 Uncharacterized protein2.7e-0441.18Show/hide
Query:  CVALSLATFFAL----SPVAVSSISASPPVSPHRTYQNMSSFF--PSVDEHSSPISADPASA----PGSGEFMGKSGSSDVKLNHGVSAFGLSICSLFSL
        C ALS+   FA+    S  +  +ISASP VSP+ T  NMSSFF  PSV    S  +A  + A    P SGEF+G+S S+  + + G++ FG+ +  LF  
Subjt:  CVALSLATFFAL----SPVAVSSISASPPVSPHRTYQNMSSFF--PSVDEHSSPISADPASA----PGSGEFMGKSGSSDVKLNHGVSAFGLSICSLFSL

Query:  RV
        R+
Subjt:  RV

A0A5N6QUU6 Uncharacterized protein3.1e-0845.1Show/hide
Query:  TAVCFCVALSLATFFAL----SPVAVSSISASPPVSPHRTYQNMSSFFPSVDEHSSPISADP------ASAPGSGEFMGKSGSSDVKLNHGVSAFGLSIC
        T+  FC ALS+A FFA+    S     +ISASP V+P+ T  NMSSFFPS  +   P SA P      A  P SGEF+GKS S+ V+   G++  G+ + 
Subjt:  TAVCFCVALSLATFFAL----SPVAVSSISASPPVSPHRTYQNMSSFFPSVDEHSSPISADP------ASAPGSGEFMGKSGSSDVKLNHGVSAFGLSIC

Query:  SL
        SL
Subjt:  SL

A0A6J1F8A3 uncharacterized protein LOC1114417751.1e-2674.31Show/hide
Query:  MATTAVC-FCVALSLATFFALSPVAVSSISASPPVSPHRTYQNMSSFFPS-VDEHSSPISADPASAPG--SGEFMGK-SGSSDVKLNHGVSAFGLSICSL
        MAT A   FCVALSLA FFA+SP AVS+ISASPPV PHR  QNMSSFFPS VD  SSPISA PA A    SGEF+GK SGS+ VKLNHG+SAFGLSICS+
Subjt:  MATTAVC-FCVALSLATFFALSPVAVSSISASPPVSPHRTYQNMSSFFPS-VDEHSSPISADPASAPG--SGEFMGK-SGSSDVKLNHGVSAFGLSICSL

Query:  FSLRVFLSV
        FSLR+FL+V
Subjt:  FSLRVFLSV

A0A6J1J7U9 uncharacterized protein LOC1114821508.1e-2573.33Show/hide
Query:  ATTAVCFCVALSLATFFALSPVAVSSISASPPVSPHRTYQNMSSFFPS-VDEHSSPISADPASAPGSGEFMGK-SGSSDVKLNHGVSAFGLSICSLFSLR
        A  A  FCVALSLAT FALSP AVS+ISASPPV PHR  QNMSSFFPS VD  SSPISA PA    SGEF+GK SGS+ VKLNHG+SAFGLSICS+F LR
Subjt:  ATTAVCFCVALSLATFFALSPVAVSSISASPPVSPHRTYQNMSSFFPS-VDEHSSPISADPASAPGSGEFMGK-SGSSDVKLNHGVSAFGLSICSLFSLR

Query:  VFLSV
        + L+V
Subjt:  VFLSV

A0A7N2KYA4 Uncharacterized protein1.6e-0438.78Show/hide
Query:  CVALSLATFFAL----SPVAVSSISASPPVSPHRTYQNMSSFF------PSVDEHSSPISADPASAPGSGEFMGKSGSSDVKLNHGVSAFGLSICSLF
        C AL +   FA+    S  +  +ISASP VSP+ T  NMSSFF      P +   ++P S      P SGEF+G+S S+  +L++G++ FG+ +  LF
Subjt:  CVALSLATFFAL----SPVAVSSISASPPVSPHRTYQNMSSFF------PSVDEHSSPISADPASAPGSGEFMGKSGSSDVKLNHGVSAFGLSICSLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACCACTGCCGTCTGCTTCTGTGTTGCCTTATCTCTGGCCACCTTTTTTGCCTTATCTCCGGTGGCCGTCTCTTCAATATCGGCTTCTCCACCCGTTTCACCTCA
CAGAACTTATCAAAATATGTCTTCTTTTTTCCCTTCTGTTGATGAGCATTCTTCTCCCATTTCTGCAGATCCGGCATCGGCACCAGGCTCTGGCGAGTTCATGGGGAAGA
GTGGGTCAAGTGATGTGAAGCTCAATCATGGGGTCTCAGCTTTTGGTCTGAGCATTTGCAGTTTGTTTAGTTTAAGAGTTTTTCTTAGTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACCACTGCCGTCTGCTTCTGTGTTGCCTTATCTCTGGCCACCTTTTTTGCCTTATCTCCGGTGGCCGTCTCTTCAATATCGGCTTCTCCACCCGTTTCACCTCA
CAGAACTTATCAAAATATGTCTTCTTTTTTCCCTTCTGTTGATGAGCATTCTTCTCCCATTTCTGCAGATCCGGCATCGGCACCAGGCTCTGGCGAGTTCATGGGGAAGA
GTGGGTCAAGTGATGTGAAGCTCAATCATGGGGTCTCAGCTTTTGGTCTGAGCATTTGCAGTTTGTTTAGTTTAAGAGTTTTTCTTAGTGTTTGA
Protein sequenceShow/hide protein sequence
MATTAVCFCVALSLATFFALSPVAVSSISASPPVSPHRTYQNMSSFFPSVDEHSSPISADPASAPGSGEFMGKSGSSDVKLNHGVSAFGLSICSLFSLRVFLSV