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Clc05G15140 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G15140
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationClcChr05:17252427..17253157
RNA-Seq ExpressionClc05G15140
SyntenyClc05G15140
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066959.1 RPM1-interacting protein 4-like [Cucumis melo var. makuwa]7.7e-2492.19Show/hide
Query:  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPM
        DS DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNT AK+NTSR EENYQYSPM
Subjt:  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPM

KAG7017799.1 RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]7.7e-2493.55Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPMV
        D+GRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNT AKNN SRPEENYQYSPMV
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPMV

KAG7022694.1 hypothetical protein SDJN02_16428, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-3375Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPM----VRIYYKFLCLDAEKMVLLFLKLLGSDGGGDNRHGG
        DKGRPLPKFGEWDVNNPASAEGFTVIFSKAR+EKKSNEASGN  AKNN   PEENYQYSPM    + +++       EKMVLL LKL+GSDGGGDNRHG 
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPM----VRIYYKFLCLDAEKMVLLFLKLLGSDGGGDNRHGG

Query:  RRLK
        RR+K
Subjt:  RRLK

XP_038883812.1 protein NOI4-like isoform X1 [Benincasa hispida]5.3e-2589.71Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPMVRIYYKF
        DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNTGAKNNTSRPEENYQYSPM + +  F
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPMVRIYYKF

XP_038883820.1 protein NOI4-like isoform X2 [Benincasa hispida]5.3e-2589.71Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPMVRIYYKF
        DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNTGAKNNTSRPEENYQYSPM + +  F
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPMVRIYYKF

TrEMBL top hitse value%identityAlignment
A0A0A0LDP9 AvrRpt-cleavage domain-containing protein4.1e-2385.29Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPMVRIYYKF
        DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNT AK+NTSR EENYQYSPM + +  F
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPMVRIYYKF

A0A5D3E371 RPM1-interacting protein 4-like3.7e-2492.19Show/hide
Query:  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPM
        DS DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNT AK+NTSR EENYQYSPM
Subjt:  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPM

A0A5J5AK52 AvrRpt-cleavage domain-containing protein2.2e-1666.2Show/hide
Query:  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG---AKNNTSRPEENYQYSPMVRIYY
        S DKGRPLPKFGEWDVNNPASA+GFTVIF+KARD+KK+N A+G  G     +NTS+  ENYQY PM + ++
Subjt:  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG---AKNNTSRPEENYQYSPMVRIYY

A0A5J5BYY8 AvrRpt-cleavage domain-containing protein2.9e-1662.67Show/hide
Query:  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGA-------KNNTSRPEENYQYSPMVRIYY
        S DKGRPLPKFGEWDVNNPASA+GFTVIF+KARD+KK+N A    G        KN+ S+  ENYQYSPM + ++
Subjt:  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGA-------KNNTSRPEENYQYSPMVRIYY

W9S8M1 AvrRpt-cleavage domain-containing protein4.9e-1668.57Show/hide
Query:  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGA------KNNTSRPEENYQYSPMV
        S DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN    ++GA       +N+++P EN  Y PMV
Subjt:  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGA------KNNTSRPEENYQYSPMV

SwissProt top hitse value%identityAlignment
O22633 Protein NOI46.4e-1379.55Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG
        DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+ G
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG

Q8GYN5 RPM1-interacting protein 44.9e-0541.67Show/hide
Query:  EDSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN-EASGNTGAKNNTSRPEEN
        ++S +K   +PKFG+WD NNP+SA+G+T IF+K R+E+ S    SG++    + S    N
Subjt:  EDSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN-EASGNTGAKNNTSRPEEN

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein8.5e-1375Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG
        DKGRPLPKFGEWDVN+P+SAEGFTVIF+KAR+EKK    S + G
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein1.0e-1350Show/hide
Query:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG------AKNNTSRPEENYQYSPMVRIYYKFLC--LDAEKMVLLFLK
        DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+ G       K+    P +      M  ++    C  L   KM LL  K
Subjt:  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG------AKNNTSRPEENYQYSPMVRIYYKFLC--LDAEKMVLLFLK

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein5.9e-1449.46Show/hide
Query:  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG------AKNNTSRPEENYQYSPMVRIYYKFLC--LDAEKMVLLFLK
        D  DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+ G       K+    P +      M  ++    C  L   KM LL  K
Subjt:  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG------AKNNTSRPEENYQYSPMVRIYYKFLC--LDAEKMVLLFLK

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein2.6e-1476.6Show/hide
Query:  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG
        D  DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+ G
Subjt:  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein2.0e-1466.67Show/hide
Query:  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEEN
        + +KG+PLPKFGEWDVNNPASAEGFTVIFSKA DEKK+ +ASG     N+   P+ N
Subjt:  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGCCTTGTTTGATATTGATACCCACATCAGCAGAATATATTTCATTGCTTTCACAGAAATGCATGGCCAAAAGCAATTACAAGATAGGCACAGATCTACACATAA
ACATGGAGCATTCTGTGCAAGAGAAAAGTGCTCTTTTAAAAGCAATGGAAGAACTGACAAACATGAGGATTCACATGATAAAGGTCGCCCCTTGCCGAAGTTCGGCGAGT
GGGATGTCAACAATCCAGCCTCCGCCGAAGGATTTACAGTAATATTTAGCAAAGCTAGAGATGAGAAGAAGTCAAATGAGGCTTCTGGGAACACAGGAGCCAAAAACAAT
ACATCCAGACCAGAAGAGAATTATCAATATTCTCCCATGGTAAGAATTTACTATAAGTTTTTGTGCTTGGATGCAGAAAAAATGGTTTTGCTGTTTCTGAAACTGCTAGG
GAGTGATGGTGGTGGTGACAACAGACATGGTGGAAGAAGGCTAAAGAAAGATTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGCCTTGTTTGATATTGATACCCACATCAGCAGAATATATTTCATTGCTTTCACAGAAATGCATGGCCAAAAGCAATTACAAGATAGGCACAGATCTACACATAA
ACATGGAGCATTCTGTGCAAGAGAAAAGTGCTCTTTTAAAAGCAATGGAAGAACTGACAAACATGAGGATTCACATGATAAAGGTCGCCCCTTGCCGAAGTTCGGCGAGT
GGGATGTCAACAATCCAGCCTCCGCCGAAGGATTTACAGTAATATTTAGCAAAGCTAGAGATGAGAAGAAGTCAAATGAGGCTTCTGGGAACACAGGAGCCAAAAACAAT
ACATCCAGACCAGAAGAGAATTATCAATATTCTCCCATGGTAAGAATTTACTATAAGTTTTTGTGCTTGGATGCAGAAAAAATGGTTTTGCTGTTTCTGAAACTGCTAGG
GAGTGATGGTGGTGGTGACAACAGACATGGTGGAAGAAGGCTAAAGAAAGATTTATGA
Protein sequenceShow/hide protein sequence
MPALFDIDTHISRIYFIAFTEMHGQKQLQDRHRSTHKHGAFCAREKCSFKSNGRTDKHEDSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNN
TSRPEENYQYSPMVRIYYKFLCLDAEKMVLLFLKLLGSDGGGDNRHGGRRLKKDL