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Clc05G15200 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G15200
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr05:17407555..17409687
RNA-Seq ExpressionClc05G15200
SyntenyClc05G15200
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042295.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-4143.15Show/hide
Query:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE
        W+  +G+     + +KYYP +YC+  R+EFL L  G++ V EYE+++T+L+RYA  ++  E D C+ FE GLR EIRT V    +  +F++LVE ALRVE
Subjt:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE

Query:  KSLVEGRIDRGGNRAGQTFSTSR-EQSHRGGSRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPGHF
        +S+ E +     +R   T S  R  Q+ R  S G   Q+   + P  S P+  +    P  ES+AS  ++  C SCG+NH GQCLV AGVCY C QPGHF
Subjt:  KSLVEGRIDRGGNRAGQTFSTSR-EQSHRGGSRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPGHF

Query:  RRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK
        ++DCPQL +     Q   SQT+ Q R  +   EG+SG RQK
Subjt:  RRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK

KAA0042309.1 reverse transcriptase [Cucumis melo var. makuwa]6.8e-4143.51Show/hide
Query:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE
        W+  +G+     + +KYYP +YC+  R+EFL L  G++ V EYE+++TEL+RYA  ++  E D C+ FE GLR EIRT V A  +  +F++LVE ALRVE
Subjt:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE

Query:  KSLVEGRIDRGGNRAGQTFSTSREQSHRGGSRGCSMQKSQGKFPQTSAPMGGSQFDHPSESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPGHFRR
        +S+ E +     +R   T S  R +  R  + G ++   Q  F   S    G Q    +ES+AS  ++  C SCG+NH GQCLV AGVCY C QPGHF++
Subjt:  KSLVEGRIDRGGNRAGQTFSTSREQSHRGGSRGCSMQKSQGKFPQTSAPMGGSQFDHPSESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPGHFRR

Query:  DCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK
        DCPQL +     Q   SQ V Q R  +   EG+SG RQK
Subjt:  DCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK

KAA0045363.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.0e-4140.15Show/hide
Query:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE
        W+  +G+     + +KYYP +YC+  R+EFL L  G++ V EYE+++TEL+RYA  ++  + D C+ FE GLR EIRT V A  +  +F++LVE ALRVE
Subjt:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE

Query:  KSLVEGR----IDRGGNRA-------------GQTFSTSREQSHRGG-------SRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCG
        +S+ + +    + RG + A             G   S+ ++  +R G       S G   Q+   + P  S P+  +    P  ES+AS  ++  C SCG
Subjt:  KSLVEGR----IDRGGNRA-------------GQTFSTSREQSHRGG-------SRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCG

Query:  KNHWGQCLVEAGVCYNCCQPGHFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK
        +NHWGQCLV AG CY C QPGHF++DCPQL +     Q   SQTV Q R  +   EG+SG RQK
Subjt:  KNHWGQCLVEAGVCYNCCQPGHFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK

KAA0060066.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.8e-4142.8Show/hide
Query:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE
        W+  +G+     + +KYYP +YC+  RNEFL L  G++ V EYE+++TEL+RYA  +V  E D C+ FE GLR EIRT V A  +  +F++LVE ALRVE
Subjt:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE

Query:  KSLVEGRIDRGGNRAGQTFSTSREQSHRGGSRGCSMQKSQGKFPQTSAP----MGGSQFDHPSESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPG
        +S+ E +              SR  S   G RG   ++   +   +S        G Q    +ES+ S  ++  C SCG+NH GQCLV AGVCY C QPG
Subjt:  KSLVEGRIDRGGNRAGQTFSTSREQSHRGGSRGCSMQKSQGKFPQTSAP----MGGSQFDHPSESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPG

Query:  HFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK
        HF++DCPQL +     Q   SQTV Q R  +   EG+SG RQK
Subjt:  HFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK

KAA0067811.1 putative Gag-pol protein [Cucumis melo var. makuwa]4.0e-4140.53Show/hide
Query:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE
        W+  +G+     + +KYYP +YC+  R+EFL L  G++ V EYE+++TEL+RYA  ++  E D C+ FE GLR EIRT V A  +  +F++LVE A+RVE
Subjt:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE

Query:  KSLVEGR----IDRGGNRA-------------GQTFSTSREQSHRGG-------SRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCG
        +S+ E +    + RG + A             G   S+ ++  +R G       S G   Q+   + P  S P+  +    P  ES+AS  ++  C SCG
Subjt:  KSLVEGR----IDRGGNRA-------------GQTFSTSREQSHRGG-------SRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCG

Query:  KNHWGQCLVEAGVCYNCCQPGHFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK
        +NH GQCLV AGVCY C QPGHF++DCPQLK+     Q   SQT+ Q R  +   EG+SG RQK
Subjt:  KNHWGQCLVEAGVCYNCCQPGHFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK

TrEMBL top hitse value%identityAlignment
A0A5A7TLH7 Reverse transcriptase1.5e-4143.15Show/hide
Query:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE
        W+  +G+     + +KYYP +YC+  R+EFL L  G++ V EYE+++T+L+RYA  ++  E D C+ FE GLR EIRT V    +  +F++LVE ALRVE
Subjt:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE

Query:  KSLVEGRIDRGGNRAGQTFSTSR-EQSHRGGSRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPGHF
        +S+ E +     +R   T S  R  Q+ R  S G   Q+   + P  S P+  +    P  ES+AS  ++  C SCG+NH GQCLV AGVCY C QPGHF
Subjt:  KSLVEGRIDRGGNRAGQTFSTSR-EQSHRGGSRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPGHF

Query:  RRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK
        ++DCPQL +     Q   SQT+ Q R  +   EG+SG RQK
Subjt:  RRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK

A0A5A7TLU6 Reverse transcriptase3.3e-4143.51Show/hide
Query:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE
        W+  +G+     + +KYYP +YC+  R+EFL L  G++ V EYE+++TEL+RYA  ++  E D C+ FE GLR EIRT V A  +  +F++LVE ALRVE
Subjt:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE

Query:  KSLVEGRIDRGGNRAGQTFSTSREQSHRGGSRGCSMQKSQGKFPQTSAPMGGSQFDHPSESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPGHFRR
        +S+ E +     +R   T S  R +  R  + G ++   Q  F   S    G Q    +ES+AS  ++  C SCG+NH GQCLV AGVCY C QPGHF++
Subjt:  KSLVEGRIDRGGNRAGQTFSTSREQSHRGGSRGCSMQKSQGKFPQTSAPMGGSQFDHPSESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPGHFRR

Query:  DCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK
        DCPQL +     Q   SQ V Q R  +   EG+SG RQK
Subjt:  DCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK

A0A5A7TP97 Reverse transcriptase1.9e-4140.15Show/hide
Query:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE
        W+  +G+     + +KYYP +YC+  R+EFL L  G++ V EYE+++TEL+RYA  ++  + D C+ FE GLR EIRT V A  +  +F++LVE ALRVE
Subjt:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE

Query:  KSLVEGR----IDRGGNRA-------------GQTFSTSREQSHRGG-------SRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCG
        +S+ + +    + RG + A             G   S+ ++  +R G       S G   Q+   + P  S P+  +    P  ES+AS  ++  C SCG
Subjt:  KSLVEGR----IDRGGNRA-------------GQTFSTSREQSHRGG-------SRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCG

Query:  KNHWGQCLVEAGVCYNCCQPGHFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK
        +NHWGQCLV AG CY C QPGHF++DCPQL +     Q   SQTV Q R  +   EG+SG RQK
Subjt:  KNHWGQCLVEAGVCYNCCQPGHFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK

A0A5A7V0R0 Reverse transcriptase3.3e-4142.8Show/hide
Query:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE
        W+  +G+     + +KYYP +YC+  RNEFL L  G++ V EYE+++TEL+RYA  +V  E D C+ FE GLR EIRT V A  +  +F++LVE ALRVE
Subjt:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE

Query:  KSLVEGRIDRGGNRAGQTFSTSREQSHRGGSRGCSMQKSQGKFPQTSAP----MGGSQFDHPSESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPG
        +S+ E +              SR  S   G RG   ++   +   +S        G Q    +ES+ S  ++  C SCG+NH GQCLV AGVCY C QPG
Subjt:  KSLVEGRIDRGGNRAGQTFSTSREQSHRGGSRGCSMQKSQGKFPQTSAP----MGGSQFDHPSESVASATKKPLCNSCGKNHWGQCLVEAGVCYNCCQPG

Query:  HFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK
        HF++DCPQL +     Q   SQTV Q R  +   EG+SG RQK
Subjt:  HFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK

A0A5A7VQD2 Putative Gag-pol protein1.9e-4140.53Show/hide
Query:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE
        W+  +G+     + +KYYP +YC+  R+EFL L  G++ V EYE+++TEL+RYA  ++  E D C+ FE GLR EIRT V A  +  +F++LVE A+RVE
Subjt:  WRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLRSEIRTSVMASMERVDFAKLVEVALRVE

Query:  KSLVEGR----IDRGGNRA-------------GQTFSTSREQSHRGG-------SRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCG
        +S+ E +    + RG + A             G   S+ ++  +R G       S G   Q+   + P  S P+  +    P  ES+AS  ++  C SCG
Subjt:  KSLVEGR----IDRGGNRA-------------GQTFSTSREQSHRGG-------SRGCSMQKSQGKFPQTSAPMGGSQFDHP-SESVASATKKPLCNSCG

Query:  KNHWGQCLVEAGVCYNCCQPGHFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK
        +NH GQCLV AGVCY C QPGHF++DCPQLK+     Q   SQT+ Q R  +   EG+SG RQK
Subjt:  KNHWGQCLVEAGVCYNCCQPGHFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCAAATTCTCCATGGACGCATAACGACTAGAAACCTGTTGTCGCAACAACAAGTTTTTTGCACCGTTGCCGGGAACTTGAGATCTGTCTGTCTTACAACAAGTTT
TTGGCGCCGTTGCCAGGGACTTGAGATCTGTCTGTCTTACAACAATAAATATTATCCTAAGTCCTATTGTGATGAGAATAGGAATGAATTTCTGAGGCTAGTGTGGGGGA
ATATATTTGTTGTTGAGTATGAGAAGAGATTCACAGAACTCGCCAGGTATGCCTTGGCATTAGTAATAGAGGAGGTAGATAATTGCAAGCATTTTGAGGAAGGCTTGCGA
AGTGAAATTCGTACCTCGGTGATGGCGAGTATGGAACGGGTAGATTTTGCTAAGCTGGTTGAAGTTGCTCTGAGAGTAGAGAAGAGCTTAGTAGAGGGAAGAATAGACAG
AGGTGGAAACAGGGCTGGACAAACATTCAGTACATCTCGGGAACAGTCTCACCGAGGTGGCTCCCGAGGTTGCAGTATGCAGAAAAGTCAAGGGAAGTTTCCTCAGACTT
CAGCTCCTATGGGAGGTTCACAGTTTGATCACCCTAGTGAATCTGTAGCTAGCGCAACAAAGAAACCATTGTGTAACTCTTGTGGTAAGAATCATTGGGGGCAGTGTTTA
GTAGAGGCTGGTGTTTGCTACAATTGTTGCCAGCCAGGACATTTCAGAAGGGATTGCCCTCAGCTTAAGTTAGGAAGAGACGCGAAACAGAGGACTGTGTCGCAAACAGT
AAACCAGCCAAGACAGGAGATGGGAGCTGGTGAAGGTAGCAGTGGTGGCAGACAGAAATGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACCAAATTCTCCATGGACGCATAACGACTAGAAACCTGTTGTCGCAACAACAAGTTTTTTGCACCGTTGCCGGGAACTTGAGATCTGTCTGTCTTACAACAAGTTT
TTGGCGCCGTTGCCAGGGACTTGAGATCTGTCTGTCTTACAACAATAAATATTATCCTAAGTCCTATTGTGATGAGAATAGGAATGAATTTCTGAGGCTAGTGTGGGGGA
ATATATTTGTTGTTGAGTATGAGAAGAGATTCACAGAACTCGCCAGGTATGCCTTGGCATTAGTAATAGAGGAGGTAGATAATTGCAAGCATTTTGAGGAAGGCTTGCGA
AGTGAAATTCGTACCTCGGTGATGGCGAGTATGGAACGGGTAGATTTTGCTAAGCTGGTTGAAGTTGCTCTGAGAGTAGAGAAGAGCTTAGTAGAGGGAAGAATAGACAG
AGGTGGAAACAGGGCTGGACAAACATTCAGTACATCTCGGGAACAGTCTCACCGAGGTGGCTCCCGAGGTTGCAGTATGCAGAAAAGTCAAGGGAAGTTTCCTCAGACTT
CAGCTCCTATGGGAGGTTCACAGTTTGATCACCCTAGTGAATCTGTAGCTAGCGCAACAAAGAAACCATTGTGTAACTCTTGTGGTAAGAATCATTGGGGGCAGTGTTTA
GTAGAGGCTGGTGTTTGCTACAATTGTTGCCAGCCAGGACATTTCAGAAGGGATTGCCCTCAGCTTAAGTTAGGAAGAGACGCGAAACAGAGGACTGTGTCGCAAACAGT
AAACCAGCCAAGACAGGAGATGGGAGCTGGTGAAGGTAGCAGTGGTGGCAGACAGAAATGCTAG
Protein sequenceShow/hide protein sequence
MNQILHGRITTRNLLSQQQVFCTVAGNLRSVCLTTSFWRRCQGLEICLSYNNKYYPKSYCDENRNEFLRLVWGNIFVVEYEKRFTELARYALALVIEEVDNCKHFEEGLR
SEIRTSVMASMERVDFAKLVEVALRVEKSLVEGRIDRGGNRAGQTFSTSREQSHRGGSRGCSMQKSQGKFPQTSAPMGGSQFDHPSESVASATKKPLCNSCGKNHWGQCL
VEAGVCYNCCQPGHFRRDCPQLKLGRDAKQRTVSQTVNQPRQEMGAGEGSSGGRQKC