CuGenDBv2

Gene ID	Clc05G15330
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DUF1713 domain-containing protein
Genome location	ClcChr05:17596670..17599923
RNA-Seq Expression	Clc05G15330
Synteny	Clc05G15330
Gene Ontology terms	GO:0006397 - mRNA processing (biological process)
InterPro domains	IPR013177 - Mitochondrial mRNA-processing protein COX24, C-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0056277.1 DUF1713 domain-containing protein [Cucumis melo var. makuwa]

7.9e-49

88.14

Show/hide

Query:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM
        MASMLQKLIRKSPP RLIAALGAQTSQNLSTP+ILHQP D DKK   HS SNL S S+SNPS FSQFYPSFPFGLCLPQISSTGLLPFEPD+VEQDDSR 
Subjt:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHK
        LWADSVKKKRKRKMNKHK
Subjt:  LWADSVKKKRKRKMNKHK

KAE8650785.1 hypothetical protein Csa_017463 [Cucumis sativus]

1.0e-48

87.29

Show/hide

Query:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM
        MASMLQ LIRKSPP RLIAALGAQTSQNLSTP+ILHQP D DKKP  H  SN+ S S+SNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPD VEQDDSR 
Subjt:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHK
        LWADSVKKKRKRKMNKHK
Subjt:  LWADSVKKKRKRKMNKHK

KAG7017804.1 hypothetical protein SDJN02_19670, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.3e-47

84.75

Show/hide

Query:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM
        MASMLQKL+RKSPP RLIAALG QTSQN   PYILHQP D DKKP  H DSNL SVS+SNPSHFS FYPSFPFG CLPQISS+G+LPFEPDFVEQDDSR 
Subjt:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHK
        LWADSVKKKRKRKMNKHK
Subjt:  LWADSVKKKRKRKMNKHK

XP_011651574.1 uncharacterized protein LOC101220058 [Cucumis sativus]

1.0e-48

87.29

Show/hide

Query:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM
        MASMLQ LIRKSPP RLIAALGAQTSQNLSTP+ILHQP D DKKP  H  SN+ S S+SNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPD VEQDDSR 
Subjt:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHK
        LWADSVKKKRKRKMNKHK
Subjt:  LWADSVKKKRKRKMNKHK

XP_023526336.1 uncharacterized protein LOC111789858 [Cucurbita pepo subsp. pepo]

9.7e-47

83.9

Show/hide

Query:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM
        MASMLQKL+RKSPP RLIAALG QTSQN   PYILHQP D DKKP  H DSNL SVS+SNPSHFS FYPSFPFG CLPQISS+G+LPFEPDFVEQD+SR 
Subjt:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHK
        LWADSVKKKRKRKMNKHK
Subjt:  LWADSVKKKRKRKMNKHK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LDP0 DUF1713 domain-containing protein

5.0e-49

87.29

Show/hide

Query:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM
        MASMLQ LIRKSPP RLIAALGAQTSQNLSTP+ILHQP D DKKP  H  SN+ S S+SNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPD VEQDDSR 
Subjt:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHK
        LWADSVKKKRKRKMNKHK
Subjt:  LWADSVKKKRKRKMNKHK

A0A5A7UNU9 DUF1713 domain-containing protein

3.8e-49

88.14

Show/hide

Query:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM
        MASMLQKLIRKSPP RLIAALGAQTSQNLSTP+ILHQP D DKK   HS SNL S S+SNPS FSQFYPSFPFGLCLPQISSTGLLPFEPD+VEQDDSR 
Subjt:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHK
        LWADSVKKKRKRKMNKHK
Subjt:  LWADSVKKKRKRKMNKHK

A0A6J1EJL0 uncharacterized protein LOC111435191

1.1e-43

79.66

Show/hide

Query:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM
        MAS+LQKLIRKSPP R IAAL +QTSQNLS PYILHQP D D+KP GH DSNL +VS+SNPS FS F+PSFPFGLCL QISSTG + FEPD+VE DDSR 
Subjt:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHK
        LWADSVKKKRKRKMNKHK
Subjt:  LWADSVKKKRKRKMNKHK

A0A6J1F832 uncharacterized protein LOC111441723

4.7e-47

83.9

Show/hide

Query:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM
        MASMLQKL+RKSPP RLIAALG QTSQN   PYILHQP D DKKP  H DSNL SVS+SNPSHFS FYPSFPFG CLPQISS+G+LPFEP+FVEQDDSR 
Subjt:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHK
        LWADSVKKKRKRKMNKHK
Subjt:  LWADSVKKKRKRKMNKHK

A0A6J1J7I5 uncharacterized protein LOC111482461

2.9e-44

81.36

Show/hide

Query:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM
        MASMLQKL+RKS P RLIAALG QTSQN   PYILHQP D DKKP  H DSNL SVS+S+ SHF  FYPSFPFG CLPQISS+G+LPFEPDFVEQDDSR 
Subjt:  MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHK
        LWADSVKKKRKRKMNKHK
Subjt:  LWADSVKKKRKRKMNKHK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G63150.1 unknown protein

2.1e-07

43.21

Show/hide

Query:  KKPSGHSDSN-LISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSR----MLWADSVKKKRKRKMNKHK
        +KP   S +N LI++S +  +   +FYPSF  GLCL      GL   E   +E+++      +++ADSVKKKRK+KMNKHK
Subjt:  KKPSGHSDSN-LISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSR----MLWADSVKKKRKRKMNKHK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGTCGATGCTTCAAAAGCTCATCAGAAAATCGCCACCCCCAAGATTAATTGCTGCTCTGGGTGCCCAGACCTCTCAAAATCTCTCAACACCCTACATTCTTCACCA
GCCGCATGATTCTGATAAGAAACCAAGCGGGCATTCCGATTCTAATTTAATCTCTGTTTCTTCTTCGAATCCATCTCACTTTTCCCAGTTTTACCCTAGTTTCCCATTTG
GGCTTTGCTTGCCGCAAATCTCCTCAACTGGGTTGCTTCCGTTCGAGCCTGATTTTGTTGAGCAAGACGATTCTCGGATGTTGTGGGCTGATAGCGTGAAGAAGAAGAGG
AAACGGAAGATGAACAAGCATAAGTTGGAGCTGATGGGACTTGAGAGGTCAGGAAGAGTTTTCTTTCCTCCTTCACCAACAAATCGATATGTTCCTGTATTTGCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MASMLQKLIRKSPPPRLIAALGAQTSQNLSTPYILHQPHDSDKKPSGHSDSNLISVSSSNPSHFSQFYPSFPFGLCLPQISSTGLLPFEPDFVEQDDSRMLWADSVKKKR
KRKMNKHKLELMGLERSGRVFFPPSPTNRYVPVFA

Clc05G15330 (gene) of Watermelon (cordophanus) v2 genome