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Clc05G15410 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G15410
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr05:17840744..17841449
RNA-Seq ExpressionClc05G15410
SyntenyClc05G15410
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035275.1 retrotransposon protein [Cucumis melo var. makuwa]4.3e-4052.35Show/hide
Query:  RVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEA
        RV +H+WT EE+R LVECL++ V    W++DNGTFR G+LA ++RM+ +++ GC ++ +  ++ +++TLKR +  I EM G  CSGFGWN E KCI  E 
Subjt:  RVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEA

Query:  EIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGS
        E+FD W  SHP+AKR  +K FS+YD+L  VF +DRATGR A T A+VGS
Subjt:  EIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGS

KAA0050293.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-4047.09Show/hide
Query:  RVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEA
        R  +H+WT EE+  LVECL++ V    W++DNGTFRPG+LA ++RM+ +++ GC ++ +  ++ +++TLKR +  I EM GL CSGFGWN E KCI  E 
Subjt:  RVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEA

Query:  EIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSEPVVDKENEDILNNQSLDFENLY
        E+FD W  SHP AK L +K F +YD+L  VF +DRATGR A T A+VGS    D  +   + + + DF  +Y
Subjt:  EIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSEPVVDKENEDILNNQSLDFENLY

KAA0057083.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-4049.15Show/hide
Query:  SRARVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCIN
        S +R+ KH WT EE+  LVECLV+ V +  WR+DNGTFRPG+L  + RM+  +I G +I  S  ++S+++ +KR ++ + EM G  CSGFGWN E+KCI 
Subjt:  SRARVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCIN

Query:  YEAEIFDAWSHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSE--PVVDKENEDILNNQSLDFENLYIP
         E E+FD WSHP+AK L +KSF  YD+L+ VF KDRATG RA + A++GS   P  D E  D +     DF  +Y P
Subjt:  YEAEIFDAWSHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSE--PVVDKENEDILNNQSLDFENLYIP

KAA0067583.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-4051.01Show/hide
Query:  RVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEA
        R  +H+WT EE+  +VECL++ V    W++DNGTFRPG+LA ++RM+ +++ GC ++ +  ++ +++TLKR +  I EM G  CSGFGWN E KCI  E 
Subjt:  RVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEA

Query:  EIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGS
        E+FD W  SHP+AK L +K FS+YD+L  VF +DRATGR A T A+VGS
Subjt:  EIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGS

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.9e-4050Show/hide
Query:  SRARVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCIN
        S +R  KH WT EE+   VECLV+ V S  WR+DNGTF+PG+LA + RM+ +++ G +IQ S  ++  V++LK+ Y+ I EM G  CSGFGWN E +CI 
Subjt:  SRARVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCIN

Query:  YEAEIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSE---------PVVDKENEDI
         E ++FD+W  SHP+AK L HKSF +YDDL+ VF KDRATG R+ T   VGS          P+ D  +EDI
Subjt:  YEAEIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSE---------PVVDKENEDI

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859539.3e-4150Show/hide
Query:  SRARVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCIN
        S +R  KH WT EE+   VECLV+ V S  WR+DNGTF+PG+LA + RM+ +++ G +IQ S  ++  V++LK+ Y+ I EM G  CSGFGWN E +CI 
Subjt:  SRARVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCIN

Query:  YEAEIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSE---------PVVDKENEDI
         E ++FD+W  SHP+AK L HKSF +YDDL+ VF KDRATG R+ T   VGS          P+ D  +EDI
Subjt:  YEAEIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSE---------PVVDKENEDI

A0A5A7T1E6 Retrotransposon protein2.1e-4052.35Show/hide
Query:  RVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEA
        RV +H+WT EE+R LVECL++ V    W++DNGTFR G+LA ++RM+ +++ GC ++ +  ++ +++TLKR +  I EM G  CSGFGWN E KCI  E 
Subjt:  RVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEA

Query:  EIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGS
        E+FD W  SHP+AKR  +K FS+YD+L  VF +DRATGR A T A+VGS
Subjt:  EIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGS

A0A5A7U0H7 Retrotransposon protein9.3e-4150Show/hide
Query:  SRARVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCIN
        S +R  KH WT EE+   VECLV+ V S  WR+DNGTF+PG+LA + RM+ +++ G +IQ S  ++  V++LK+ Y+ I EM G  CSGFGWN E +CI 
Subjt:  SRARVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCIN

Query:  YEAEIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSE---------PVVDKENEDI
         E ++FD+W  SHP+AK L HKSF +YDDL+ VF KDRATG R+ T   VGS          P+ D  +EDI
Subjt:  YEAEIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSE---------PVVDKENEDI

A0A5A7U308 Retrotransposon protein9.3e-4147.09Show/hide
Query:  RVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEA
        R  +H+WT EE+  LVECL++ V    W++DNGTFRPG+LA ++RM+ +++ GC ++ +  ++ +++TLKR +  I EM GL CSGFGWN E KCI  E 
Subjt:  RVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEA

Query:  EIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSEPVVDKENEDILNNQSLDFENLY
        E+FD W  SHP AK L +K F +YD+L  VF +DRATGR A T A+VGS    D  +   + + + DF  +Y
Subjt:  EIFDAW--SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSEPVVDKENEDILNNQSLDFENLY

A0A5A7UME4 Retrotransposon protein1.2e-4049.15Show/hide
Query:  SRARVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCIN
        S +R+ KH WT EE+  LVECLV+ V +  WR+DNGTFRPG+L  + RM+  +I G +I  S  ++S+++ +KR ++ + EM G  CSGFGWN E+KCI 
Subjt:  SRARVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCIN

Query:  YEAEIFDAWSHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSE--PVVDKENEDILNNQSLDFENLYIP
         E E+FD WSHP+AK L +KSF  YD+L+ VF KDRATG RA + A++GS   P  D E  D +     DF  +Y P
Subjt:  YEAEIFDAWSHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSE--PVVDKENEDILNNQSLDFENLYIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G27260.1 unknown protein4.3e-1427.55Show/hide
Query:  WTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEAEIFDAW
        W+ EE ++LV+ LV+ + + +WR  NGT           M +     C  +   H  S+++ LK QY   +++     SGFGW+   K      E++  +
Subjt:  WTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEAEIFDAW

Query:  --SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSEPVVDKENEDILNNQSLDFENLY---------IPEHRSPALPH--QMTFQLPP
          +HP+ K+LR+ +F F+D+L I+F +  ATG+ A    +  ++ +  +  E+       DF+N+Y           EH +P + H    + +LPP
Subjt:  --SHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSEPVVDKENEDILNNQSLDFENLY---------IPEHRSPALPH--QMTFQLPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCATCCGGATCACGCGCAAGAGTCGTAAAACATATTTGGACGGATGAGGAGGACAGAATCCTTGTGGAGTGTTTGGTCCAGTTTGTGCAGTCTAGACACTGGCG
AGCTGATAACGGGACTTTTCGACCTGGATTCCTAGCAAACATACTACGGATGGTGCAGCAGAGGATTCTGGGGTGTTCCATACAGGTAAGCCCACATTTGGAGTCAAAGG
TTAGGACGTTGAAGAGACAGTACAACATGATCGTTGAAATGTTGGGCCTAGGATGTAGTGGGTTTGGTTGGAATGCGGAGCGCAAATGTATTAACTATGAGGCGGAGATA
TTTGACGCGTGGAGTCATCCGAGTGCAAAAAGACTGCGCCATAAGTCATTTTCGTTCTATGACGACTTGGCCATTGTATTTAGCAAAGACAGAGCCACAGGGCGTCGTGC
AACCACCACTGCAGAGGTCGGATCTGAACCAGTTGTGGACAAGGAGAACGAAGACATCTTGAATAACCAGTCCCTGGACTTTGAGAACTTATATATTCCTGAGCACCGTT
CACCAGCTCTCCCACATCAGATGACATTCCAACTACCCCCAACGGTAGAGGGTCTGGGAGTAGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCATCCGGATCACGCGCAAGAGTCGTAAAACATATTTGGACGGATGAGGAGGACAGAATCCTTGTGGAGTGTTTGGTCCAGTTTGTGCAGTCTAGACACTGGCG
AGCTGATAACGGGACTTTTCGACCTGGATTCCTAGCAAACATACTACGGATGGTGCAGCAGAGGATTCTGGGGTGTTCCATACAGGTAAGCCCACATTTGGAGTCAAAGG
TTAGGACGTTGAAGAGACAGTACAACATGATCGTTGAAATGTTGGGCCTAGGATGTAGTGGGTTTGGTTGGAATGCGGAGCGCAAATGTATTAACTATGAGGCGGAGATA
TTTGACGCGTGGAGTCATCCGAGTGCAAAAAGACTGCGCCATAAGTCATTTTCGTTCTATGACGACTTGGCCATTGTATTTAGCAAAGACAGAGCCACAGGGCGTCGTGC
AACCACCACTGCAGAGGTCGGATCTGAACCAGTTGTGGACAAGGAGAACGAAGACATCTTGAATAACCAGTCCCTGGACTTTGAGAACTTATATATTCCTGAGCACCGTT
CACCAGCTCTCCCACATCAGATGACATTCCAACTACCCCCAACGGTAGAGGGTCTGGGAGTAGCATGA
Protein sequenceShow/hide protein sequence
MEASGSRARVVKHIWTDEEDRILVECLVQFVQSRHWRADNGTFRPGFLANILRMVQQRILGCSIQVSPHLESKVRTLKRQYNMIVEMLGLGCSGFGWNAERKCINYEAEI
FDAWSHPSAKRLRHKSFSFYDDLAIVFSKDRATGRRATTTAEVGSEPVVDKENEDILNNQSLDFENLYIPEHRSPALPHQMTFQLPPTVEGLGVA