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Clc05G15470 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G15470
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr05:17954255..17961053
RNA-Seq ExpressionClc05G15470
SyntenyClc05G15470
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-0460.47Show/hide
Query:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
        +R+AQRL++ + S+Q D EKKYGIER K LGA  F GTT PA+
Subjt:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.5e-0458.14Show/hide
Query:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
        +R+AQRLV+ + S+Q D EKKYG ER K LGA  F GTT P +
Subjt:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
XP_038882393.1 uncharacterized protein LOC120073661 [Benincasa hispida]5.3e-0669.77Show/hide
Query:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
        ++I QRLVAS+ S++ D EKKYGIERFK LGA  FEGTT+PAE
Subjt:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
XP_038887090.1 uncharacterized protein LOC120077268 [Benincasa hispida]2.6e-0567.44Show/hide
Query:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
        ++IAQRL  SV S + D+EKKYGIERFK LGA  FEGT  PAE
Subjt:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]4.9e-0462.79Show/hide
Query:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
        +RI QRL ASV S Q D EKK+GIER K LGA  F+GTT+P +
Subjt:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
TrEMBL top hitse value%identityAlignment
A0A5A7T1M0 Reverse transcriptase3.1e-0458.14Show/hide
Query:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
        +R+AQRLV+ + S+Q D EKKYG ER K LGA  F GTT P +
Subjt:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
A0A5D3BB91 Reverse transcriptase3.1e-0458.14Show/hide
Query:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
        +R+AQRLV+ + S+Q D EKKYG ER K LGA  F GTT P +
Subjt:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
A0A5D3DES5 DNA/RNA polymerases superfamily protein6.3e-0560.47Show/hide
Query:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
        +R+AQRL++ + S+Q D EKKYGIER K LGA  F GTT PA+
Subjt:  ERIAQRLVASVESSQGDLEKKYGIERFKVLGAQVFEGTTEPAE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTTGAGTTCAGAAACCTTCATTGGGGGGCAAAGTTTACTGAGGCAGACCTAAAAGGATGGAACAATGTTGAGTTTGGCTGCTGCGAGAGAGTGCATGAAAGCTT
TACCATCAACAAGAATCCATGGCCACCGAGCTGCTCAGTTGCAATGCAACTAGTAAAGACCACAATCCGTGCTCGCCCATTCTTGTCTTCGATTATGCTTCATCAACCAT
GCGAAACCCACGAAGTTCCAGCTGCACCAGTGGCTCCTGAAAAGCGTTACGCATATTCGGACACCAACCAGCAAGGTTTTGAGTTGATTGGGTTTGGAATAGTTTCAGAA
CTATTTGGACACTTCACAGCAATGACCCAAGTCTATCTTGGTCAAGGAATCTCTGGTTTGATCGGGGATCGGGGTCAAACCGAGGACCTTTTTAGGATCCCCATTCAAGG
ACTGGGAGGGTATCCTCGCCCTAACTCCAATTTATATATATATAAGATGCGGTCACTCTCGTTCTCGCTCACTCGCTCTTGCTCTCTCTCGCATCTGTTCCTCACTTACA
ATCACTCTATAACACTTGCTCTCTCTCACACTCTCGCTCACGCTCTCTCTCTCACTCTCTCCCGCGAGATCAAAGGGAGGAAACAAGGAATCCCCGCCATCCCTCGTCCT
CGCCTACAAATGGCAGGGACGGGGGCGGGGATGGGGTCTGAACAAGGTTCGATGTTTGGTGAATATCGAGCGGAAGAGTTAGAGTTTGAAGCTGGAATTTTGAGGGCGAA
TACTGAAGGACTAGGAGAAGACACTAGGGCAACCCTGGATATGTCTATGTGTATTGACACTGTTGTGTTGAGATTACTCCACACAGTTAAGGTTGTTTCAACGTTGAGTA
GCATTGAGTCTCGCTCCTCCTCAACTAAGGAAAGAATAGCTCAGAGATTGGTAGCTAGTGTAGAGTCATCTCAAGGGGATCTTGAGAAGAAATATGGAATAGAAAGGTTT
AAAGTTTTGGGTGCCCAAGTGTTTGAAGGTACTACAGAACCTGCAGAGCCGAGGTGTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTTGAGTTCAGAAACCTTCATTGGGGGGCAAAGTTTACTGAGGCAGACCTAAAAGGATGGAACAATGTTGAGTTTGGCTGCTGCGAGAGAGTGCATGAAAGCTT
TACCATCAACAAGAATCCATGGCCACCGAGCTGCTCAGTTGCAATGCAACTAGTAAAGACCACAATCCGTGCTCGCCCATTCTTGTCTTCGATTATGCTTCATCAACCAT
GCGAAACCCACGAAGTTCCAGCTGCACCAGTGGCTCCTGAAAAGCGTTACGCATATTCGGACACCAACCAGCAAGGTTTTGAGTTGATTGGGTTTGGAATAGTTTCAGAA
CTATTTGGACACTTCACAGCAATGACCCAAGTCTATCTTGGTCAAGGAATCTCTGGTTTGATCGGGGATCGGGGTCAAACCGAGGACCTTTTTAGGATCCCCATTCAAGG
ACTGGGAGGGTATCCTCGCCCTAACTCCAATTTATATATATATAAGATGCGGTCACTCTCGTTCTCGCTCACTCGCTCTTGCTCTCTCTCGCATCTGTTCCTCACTTACA
ATCACTCTATAACACTTGCTCTCTCTCACACTCTCGCTCACGCTCTCTCTCTCACTCTCTCCCGCGAGATCAAAGGGAGGAAACAAGGAATCCCCGCCATCCCTCGTCCT
CGCCTACAAATGGCAGGGACGGGGGCGGGGATGGGGTCTGAACAAGGTTCGATGTTTGGTGAATATCGAGCGGAAGAGTTAGAGTTTGAAGCTGGAATTTTGAGGGCGAA
TACTGAAGGACTAGGAGAAGACACTAGGGCAACCCTGGATATGTCTATGTGTATTGACACTGTTGTGTTGAGATTACTCCACACAGTTAAGGTTGTTTCAACGTTGAGTA
GCATTGAGTCTCGCTCCTCCTCAACTAAGGAAAGAATAGCTCAGAGATTGGTAGCTAGTGTAGAGTCATCTCAAGGGGATCTTGAGAAGAAATATGGAATAGAAAGGTTT
AAAGTTTTGGGTGCCCAAGTGTTTGAAGGTACTACAGAACCTGCAGAGCCGAGGTGTGGCTGA
Protein sequenceShow/hide protein sequence
MQVEFRNLHWGAKFTEADLKGWNNVEFGCCERVHESFTINKNPWPPSCSVAMQLVKTTIRARPFLSSIMLHQPCETHEVPAAPVAPEKRYAYSDTNQQGFELIGFGIVSE
LFGHFTAMTQVYLGQGISGLIGDRGQTEDLFRIPIQGLGGYPRPNSNLYIYKMRSLSFSLTRSCSLSHLFLTYNHSITLALSHTLAHALSLTLSREIKGRKQGIPAIPRP
RLQMAGTGAGMGSEQGSMFGEYRAEELEFEAGILRANTEGLGEDTRATLDMSMCIDTVVLRLLHTVKVVSTLSSIESRSSSTKERIAQRLVASVESSQGDLEKKYGIERF
KVLGAQVFEGTTEPAEPRCG