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Clc05G15885 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G15885
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein FAR1-RELATED SEQUENCE 4
Genome locationClcChr05:19995052..19995545
RNA-Seq ExpressionClc05G15885
SyntenyClc05G15885
Gene Ontology termsGO:0006313 - transposition, DNA-mediated (biological process)
GO:0016020 - membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0004803 - transposase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061274.1 uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa]3.4e-4667.16Show/hide
Query:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV
        MNDK  CRP DV++YM+ HHGVN+SYDKAWR REIALNSIRG+P  SYA+L++FS ALIR NPG +T +E D EGRFK YFMALAASIDAWNY   ++SV
Subjt:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV

Query:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD
        DGA +KNK++G L+S  T+D NSQI+  A+V+VD
Subjt:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD

TYK29863.1 MuDRA-like transposase [Cucumis melo var. makuwa]8.1e-4868.42Show/hide
Query:  NDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSVD
        NDK  CRP DV++YM+ HHGVN+SYDKAWR REIALNSIRG+P  SYA+L++FS ALIR NPG +T +E D EGRFK YFMALAASIDAWNY  P++SVD
Subjt:  NDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSVD

Query:  GATLKNKFMGILLSTYTLDGNSQIILLAYVIVD
        GA +KNK++G L+S  T+DGNSQI+ LA+ +VD
Subjt:  GATLKNKFMGILLSTYTLDGNSQIILLAYVIVD

XP_008455803.1 PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo]9.0e-4767.67Show/hide
Query:  NDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSVD
        NDKV CRP DV++YM+ HH VN+SYDKAW  REIALNSIRG+P  SYA+L++FS ALIR NPG +T +E D EGRFK YFMALAASIDAWNY  P++SVD
Subjt:  NDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSVD

Query:  GATLKNKFMGILLSTYTLDGNSQIILLAYVIVD
        GA +KNK++G L+ST T+DGNSQI+ L + +VD
Subjt:  GATLKNKFMGILLSTYTLDGNSQIILLAYVIVD

XP_016901440.1 PREDICTED: uncharacterized protein LOC107991253 [Cucumis melo]2.4e-4767.91Show/hide
Query:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV
        MNDK  CRP DV++YM+ HH VNVSYDKAWR REIALNSIRG+P+ SY +L++FS ALIR NPG +T +E D EGRFK YFMALA SIDAWNY  P++SV
Subjt:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV

Query:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD
        DGAT+KNK++G L+S  T+DGNSQI+ LA+ +VD
Subjt:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD

XP_016902696.1 PREDICTED: uncharacterized protein LOC107991824 [Cucumis melo]1.1e-4767.91Show/hide
Query:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV
        MNDK  CRP DV++YM+ HH VN+SYDKAWR REIALNSIRG+P  SYA+L++FS ALIR NPG +T +E D EGRFK YFMALAASIDAWNY  P++SV
Subjt:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV

Query:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD
        DGA +KNK++G L+S  T+DGNSQI+ LA+ +VD
Subjt:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD

TrEMBL top hitse value%identityAlignment
A0A1S3C300 uncharacterized protein LOC1034958994.3e-4767.67Show/hide
Query:  NDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSVD
        NDKV CRP DV++YM+ HH VN+SYDKAW  REIALNSIRG+P  SYA+L++FS ALIR NPG +T +E D EGRFK YFMALAASIDAWNY  P++SVD
Subjt:  NDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSVD

Query:  GATLKNKFMGILLSTYTLDGNSQIILLAYVIVD
        GA +KNK++G L+ST T+DGNSQI+ L + +VD
Subjt:  GATLKNKFMGILLSTYTLDGNSQIILLAYVIVD

A0A1S4E0D5 uncharacterized protein LOC1079912531.1e-4767.91Show/hide
Query:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV
        MNDK  CRP DV++YM+ HH VNVSYDKAWR REIALNSIRG+P+ SY +L++FS ALIR NPG +T +E D EGRFK YFMALA SIDAWNY  P++SV
Subjt:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV

Query:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD
        DGAT+KNK++G L+S  T+DGNSQI+ LA+ +VD
Subjt:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD

A0A1S4E392 uncharacterized protein LOC1079918245.1e-4867.91Show/hide
Query:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV
        MNDK  CRP DV++YM+ HH VN+SYDKAWR REIALNSIRG+P  SYA+L++FS ALIR NPG +T +E D EGRFK YFMALAASIDAWNY  P++SV
Subjt:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV

Query:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD
        DGA +KNK++G L+S  T+DGNSQI+ LA+ +VD
Subjt:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD

A0A5A7V1Z6 CCHC-type domain-containing protein1.7e-4667.16Show/hide
Query:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV
        MNDK  CRP DV++YM+ HHGVN+SYDKAWR REIALNSIRG+P  SYA+L++FS ALIR NPG +T +E D EGRFK YFMALAASIDAWNY   ++SV
Subjt:  MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSV

Query:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD
        DGA +KNK++G L+S  T+D NSQI+  A+V+VD
Subjt:  DGATLKNKFMGILLSTYTLDGNSQIILLAYVIVD

A0A5D3E198 MuDRA-like transposase3.9e-4868.42Show/hide
Query:  NDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSVD
        NDK  CRP DV++YM+ HHGVN+SYDKAWR REIALNSIRG+P  SYA+L++FS ALIR NPG +T +E D EGRFK YFMALAASIDAWNY  P++SVD
Subjt:  NDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSVD

Query:  GATLKNKFMGILLSTYTLDGNSQIILLAYVIVD
        GA +KNK++G L+S  T+DGNSQI+ LA+ +VD
Subjt:  GATLKNKFMGILLSTYTLDGNSQIILLAYVIVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGACAAGGTGTCATGTCGTCCTGGTGATGTTGTTAGCTATATGAGAAGACATCATGGTGTAAATGTAAGTTATGACAAGGCTTGGAGAGACCGTGAAATTGCTCT
CAATTCCATCAGGGGTAGTCCTAGATCCTCATATGCTCTTTTGACGTCGTTCTCAATTGCCTTAATTAGAGAAAATCCTGGAATACATACAACACAAGAATATGATGGTG
AAGGTAGATTTAAGCATTATTTTATGGCCCTTGCTGCTTCCATAGATGCATGGAATTACTATTTTCCTATTATGTCTGTTGATGGTGCCACTCTAAAGAACAAATTTATG
GGGATTTTGTTATCTACTTACACTCTTGATGGTAATTCGCAAATTATACTTCTTGCATATGTCATTGTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGACAAGGTGTCATGTCGTCCTGGTGATGTTGTTAGCTATATGAGAAGACATCATGGTGTAAATGTAAGTTATGACAAGGCTTGGAGAGACCGTGAAATTGCTCT
CAATTCCATCAGGGGTAGTCCTAGATCCTCATATGCTCTTTTGACGTCGTTCTCAATTGCCTTAATTAGAGAAAATCCTGGAATACATACAACACAAGAATATGATGGTG
AAGGTAGATTTAAGCATTATTTTATGGCCCTTGCTGCTTCCATAGATGCATGGAATTACTATTTTCCTATTATGTCTGTTGATGGTGCCACTCTAAAGAACAAATTTATG
GGGATTTTGTTATCTACTTACACTCTTGATGGTAATTCGCAAATTATACTTCTTGCATATGTCATTGTTGATTAG
Protein sequenceShow/hide protein sequence
MNDKVSCRPGDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSVDGATLKNKFM
GILLSTYTLDGNSQIILLAYVIVD