CuGenDBv2

Gene ID	Clc05G16340
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DNA replication regulator sld2 like
Genome location	ClcChr05:23050360..23050863
RNA-Seq Expression	Clc05G16340
Synteny	Clc05G16340
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004149171.1 uncharacterized protein LOC101215948 [Cucumis sativus]

2.0e-75

91.72

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSA--TNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTSS
        MVQKLQPIKGGGGS+KVGATGTISSLMMRELESMRS  KKPVTSKNKSSSA  T TVSSAAS+PKRL QSKSF EVS++RYNSVNNRSFGNSHNATKT S
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSA--TNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTSS

Query:  RDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        RDVHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  RDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

XP_008454517.1 PREDICTED: uncharacterized protein LOC103494914 [Cucumis melo]

5.7e-75

91.18

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSA---TNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTS
        MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRS  KKPVTSKNKSSSA   T TVSSA S+PKRL QSKSF EVS++RYNSVNNRSFGNSHNATKT 
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSA---TNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTS

Query:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SRDVHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

XP_022976588.1 uncharacterized protein LOC111476940 [Cucurbita maxima]

7.7e-72

82.97

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSATNTVSS---------------AASVPKRLQQSKSFEEVSNKRYNSVNNR
        MVQKLQPIKGGGGSI VGATGTISSLMMRELESMRS PKKPV SK KSSSAT TVSS               AAS+P RLQQSKSF+EVSN+RYN+VNNR
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSATNTVSS---------------AASVPKRLQQSKSFEEVSNKRYNSVNNR

Query:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SFG SHNATK  SRDVHR+PMLGSNDVYTDGNSYREKPERKGLRAV IVDVKCNNPDRAW+SRPLSSRLRKLGFSKLSETFA
Subjt:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

XP_023536516.1 uncharacterized protein LOC111797670 [Cucurbita pepo subsp. pepo]

1.9e-70

81.32

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSATNTVSS---------------AASVPKRLQQSKSFEEVSNKRYNSVNNR
        MVQKLQPIKGGGGSI VGATGTISSLMMRELESMRS PKKPVT K KSSS+T TVSS               AAS+P RLQQSKSF+EVSN+RYN+VNNR
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSATNTVSS---------------AASVPKRLQQSKSFEEVSNKRYNSVNNR

Query:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SFG SHNATK  SRDV R+PMLGSNDVYTDG+SYREKPERKGLRAV IVDVKCNNPDRAW+SRPLSSRLRKLGFSKLSETFA
Subjt:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

XP_038899712.1 uncharacterized protein LOC120086960 [Benincasa hispida]

4.1e-73

90.42

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSATNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTSSRD
        MVQKLQP KGGGGSIKVGATGTISSLMMRELESMRSGPKKPV SKNKS       SSAASVPKRLQQSKSFEEVSN+ YNSVN+RSFGNSHNATK  SRD
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSATNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTSSRD

Query:  VHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        VHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  VHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAQ8 Uncharacterized protein

9.5e-76

91.72

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSA--TNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTSS
        MVQKLQPIKGGGGS+KVGATGTISSLMMRELESMRS  KKPVTSKNKSSSA  T TVSSAAS+PKRL QSKSF EVS++RYNSVNNRSFGNSHNATKT S
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSA--TNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTSS

Query:  RDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        RDVHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  RDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

A0A1S3BYW8 uncharacterized protein LOC103494914

2.8e-75

91.18

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSA---TNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTS
        MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRS  KKPVTSKNKSSSA   T TVSSA S+PKRL QSKSF EVS++RYNSVNNRSFGNSHNATKT 
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSA---TNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTS

Query:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SRDVHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

A0A5D3B9E2 Uncharacterized protein

2.8e-75

91.18

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSA---TNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTS
        MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRS  KKPVTSKNKSSSA   T TVSSA S+PKRL QSKSF EVS++RYNSVNNRSFGNSHNATKT 
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSA---TNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTS

Query:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SRDVHR+PML SNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Subjt:  SRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

A0A6J1FA89 uncharacterized protein LOC111443703

1.3e-69

80.22

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSATNTVSS---------------AASVPKRLQQSKSFEEVSNKRYNSVNNR
        MVQKLQPIKGGGGSI VGATGTISSLMMRELESMR  PKK VT + KSSS+T TVSS               AAS+P RLQQSKSF+EVSN+RYN+VNNR
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSATNTVSS---------------AASVPKRLQQSKSFEEVSNKRYNSVNNR

Query:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SFG SHNATK  SRDVHR+PMLGSNDVYTDG+SYREKPERKGLRAV IVDVKCNNPDRAW+SRPLSSRLRKLGFSKLSETFA
Subjt:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

A0A6J1INY9 uncharacterized protein LOC111476940

3.7e-72

82.97

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSATNTVSS---------------AASVPKRLQQSKSFEEVSNKRYNSVNNR
        MVQKLQPIKGGGGSI VGATGTISSLMMRELESMRS PKKPV SK KSSSAT TVSS               AAS+P RLQQSKSF+EVSN+RYN+VNNR
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSATNTVSS---------------AASVPKRLQQSKSFEEVSNKRYNSVNNR

Query:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
        SFG SHNATK  SRDVHR+PMLGSNDVYTDGNSYREKPERKGLRAV IVDVKCNNPDRAW+SRPLSSRLRKLGFSKLSETFA
Subjt:  SFGNSHNATKTSSRDVHRLPMLGSNDVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G54850.1 unknown protein

6.2e-27

40.39

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Query:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMR-SGPKKPVTSKNKSSSATNT-VSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKT--
        MVQKL+ IKGGGGSIK+GATGT+++LM REL+SM+ + PK P T   +++   +    +++S P+R +  KS +E S+   ++VNN      HNA  T  
Subjt:  MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMR-SGPKKPVTSKNKSSSATNT-VSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKT--

Query:  ---------------SSRDVHRLPMLGSNDVYTDGNSYREK------------------PER-KGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKL
                       +++ +H+L MLGS++V T    +  K                  P R K +  V IVDVKC NPDRAWA+ P++SRL+KLGFSKL
Subjt:  ---------------SSRDVHRLPMLGSNDVYTDGNSYREK------------------PER-KGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKL

Query:  SET
        +E+
Subjt:  SET

Sequences

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CDS sequence

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ATGGTTCAGAAACTGCAACCTATCAAAGGTGGTGGAGGATCCATTAAGGTTGGAGCCACCGGAACTATTAGCTCTCTAATGATGAGGGAATTAGAGTCAATGAGATCCGG
CCCCAAGAAGCCAGTAACTTCTAAAAACAAATCTTCATCTGCCACTAATACTGTTTCATCTGCTGCTTCCGTTCCTAAAAGACTACAACAAAGTAAATCATTTGAAGAGG
TAAGCAATAAAAGATATAATAGTGTTAATAACAGAAGCTTTGGGAACTCTCATAATGCTACTAAAACCAGTTCGAGGGATGTCCATCGTCTGCCAATGCTTGGCTCTAAT
GATGTTTATACTGATGGAAATAGCTATAGAGAGAAACCAGAAAGAAAAGGACTTAGAGCAGTTGCCATTGTGGATGTGAAGTGCAATAACCCTGATAGAGCTTGGGCTAG
CCGCCCTTTATCAAGTCGACTCAGAAAACTTGGCTTTTCAAAGCTATCAGAAACCTTTGCTTGA

mRNA sequence

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Protein sequence

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MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVTSKNKSSSATNTVSSAASVPKRLQQSKSFEEVSNKRYNSVNNRSFGNSHNATKTSSRDVHRLPMLGSN
DVYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA

Clc05G16340 (gene) of Watermelon (cordophanus) v2 genome