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Clc05G16385 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G16385
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr05:23131154..23131916
RNA-Seq ExpressionClc05G16385
SyntenyClc05G16385
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.8e-5856.72Show/hide
Query:  KRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEESKSEM
        K+K P+SRV +W    H D EN+  +K P ETK  GEIHS VPSRMK K F+TL++S+GSLKVKR DVI  NP+ + SEQ E ET CHHI IIEES++  
Subjt:  KRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEESKSEM

Query:  SEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK-------------------------
         EED +++  +LED GQS V+ELKEVNLG+IEE             E  KYMSLLTEYRDIFAWSY+EMP LD K                         
Subjt:  SEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK-------------------------

Query:  ----IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG
            IE EVNKLIEA FIREVKYPTWI NIVPVRKKNG
Subjt:  ----IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]4.7e-5856.3Show/hide
Query:  KRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEESKSEM
        K+K P+SRV +W    H D +N+  +K P ETK  GEIHS VPSRMK K F+TL++S+GSLKVKR DVI  NP+ + SEQ E ET CHHI IIEES++  
Subjt:  KRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEESKSEM

Query:  SEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK-------------------------
         EED +++  +LED GQS V+ELKEVNLG+IEE             E  KYMSLLTEYRDIFAWSY+EMP LD K                         
Subjt:  SEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK-------------------------

Query:  ----IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG
            IE EVNKLIEA FIREVKYPTWI NIVPVRKKNG
Subjt:  ----IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]4.7e-5856.3Show/hide
Query:  KRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEESKSEM
        K+K P+SRV +W    H D +N+  +K P ETK  GEIHS VPSRMK K F+TL++S+GSLKVKR DVI  NP+ + SEQ E ET CHHI IIEES++  
Subjt:  KRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEESKSEM

Query:  SEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK-------------------------
         EED +++  +LED GQS V+ELKEVNLG+IEE             E  KYMSLLTEYRDIFAWSY+EMP LD K                         
Subjt:  SEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK-------------------------

Query:  ----IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG
            IE EVNKLIEA FIREVKYPTWI NIVPVRKKNG
Subjt:  ----IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]4.7e-5856.3Show/hide
Query:  KRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEESKSEM
        K+K P+SRV +W    H D +N+  +K P ETK  GEIHS VPSRMK K F+TL++S+GSLKVKR DVI  NP+ + SEQ E ET CHHI IIEES++  
Subjt:  KRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEESKSEM

Query:  SEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK-------------------------
         EED +++  +LED GQS V+ELKEVNLG+IEE             E  KYMSLLTEYRDIFAWSY+EMP LD K                         
Subjt:  SEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK-------------------------

Query:  ----IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG
            IE EVNKLIEA FIREVKYPTWI NIVPVRKKNG
Subjt:  ----IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]4.7e-5856.3Show/hide
Query:  KRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEESKSEM
        K+K P+SRV +W    H D +N+  +K P ETK  GEIHS VPSRMK K F+TL++S+GSLKVKR DVI  NP+ + SEQ E ET CHHI IIEES++  
Subjt:  KRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEESKSEM

Query:  SEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK-------------------------
         EED +++  +LED GQS V+ELKEVNLG+IEE             E  KYMSLLTEYRDIFAWSY+EMP LD K                         
Subjt:  SEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK-------------------------

Query:  ----IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG
            IE EVNKLIEA FIREVKYPTWI NIVPVRKKNG
Subjt:  ----IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG

TrEMBL top hitse value%identityAlignment
A0A5A7SPY4 RNase H domain-containing protein2.0e-5453.09Show/hide
Query:  ASATIKRKGPISRVSIWHE----DAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEE
        +S   K+K   S +S+WH     D E+   ++ P E KGE EIHS VP RMK K F+TL++S+GSLKVKR DVI  NP+ + S+Q E E   HHI I+EE
Subjt:  ASATIKRKGPISRVSIWHE----DAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEE

Query:  SKSEMSEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK--------------------
         + E  EEDV+D   +LED GQSIV+ELKEVNLG+IEE             EEGKYMSLLTEY+DIFAWSY+EMP LD K                    
Subjt:  SKSEMSEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK--------------------

Query:  ---------IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG
                 IE EVNKLIEARFIR+VKYPTWI NI+PV+KKNG
Subjt:  ---------IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG

A0A5A7UKY9 Reverse transcriptase domain-containing protein1.1e-5559.35Show/hide
Query:  ASATIKRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEE
        +S   K+K   SRVS+W    H D E+   ++ P E KGE EI S VPSRMK K F+TL++S+GSLKVK  DV+  N   + SEQ E E  CHHI I+E+
Subjt:  ASATIKRKGPISRVSIW----HEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEE

Query:  SKSEMSEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSKIEAEVNKLIEARFIREVKYP
         + E  EED  D   +LE+ GQS V+ELKEVNLG+IEE             EEGKYMSLLTEY+DIFAWSY+EM  LD KIE EVNKLIEA FIR+VKYP
Subjt:  SKSEMSEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSKIEAEVNKLIEARFIREVKYP

Query:  TWIENIVPVRKKNG
        TWIENIVPVRKKNG
Subjt:  TWIENIVPVRKKNG

A0A5D3DB95 RNase H domain-containing protein2.0e-5453.09Show/hide
Query:  ASATIKRKGPISRVSIWHE----DAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEE
        +S   K+K   S +S+WH     D E+   ++ P E KGE EIHS VP RMK K F+TL++S+GSLKVKR DVI  NP+ + S+Q E E   HHI I+EE
Subjt:  ASATIKRKGPISRVSIWHE----DAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEE

Query:  SKSEMSEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK--------------------
         + E  EEDV+D   +LED GQSIV+ELKEVNLG+IEE             EEGKYMSLLTEY+DIFAWSY+EMP LD K                    
Subjt:  SKSEMSEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK--------------------

Query:  ---------IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG
                 IE EVNKLIEARFIR+VKYPTWI NI+PV+KKNG
Subjt:  ---------IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.5e-5453.5Show/hide
Query:  ASATIKRKGPISRVSIWHE----DAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEE
        +S   K+K   SRV +WH       E+   ++ P E KGE EI S VPSRMK K F+TL++S+GSLKVKR DVI  NP+ + SEQ E E  CHHI I+EE
Subjt:  ASATIKRKGPISRVSIWHE----DAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEE

Query:  SKSEMSEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK--------------------
         + E  EED +++  +LED GQS V+ELKEVNLG+IEE             EEGKYMSLLTEY+DIFAWSY+EMP LD K                    
Subjt:  SKSEMSEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSK--------------------

Query:  ---------IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG
                 IE EVNKLIEA FIREVKYPTWI NIVPVRKKNG
Subjt:  ---------IEAEVNKLIEARFIREVKYPTWIENIVPVRKKNG

A0A5D3E3K0 Uncharacterized protein4.3e-5760.09Show/hide
Query:  ASATIKRKGPISRVSIWHE----DAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEE
        +S   K+K   SRV +WH     D E+   ++ P E KG+ EI S VPSRMK K F+TL++S+GSLKVKR DVI  NP+ + SEQ E E  CHHI I+EE
Subjt:  ASATIKRKGPISRVSIWHE----DAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEE

Query:  SKSEMSEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSKIEAEVNKLIEARFIREVKYP
         + E  EED +D   +LED GQS V+ELKEVNLG+IEE             EEGKYMSLLTEY+DIFAWSY+EMP LD KIEA+VNKLIE  FIREVK P
Subjt:  SKSEMSEEDVDDSLLTLEDCGQSIVNELKEVNLGSIEE------------GEEGKYMSLLTEYRDIFAWSYREMPDLDSKIEAEVNKLIEARFIREVKYP

Query:  TWIENIVPVRKKN
        TWI NIVPVRKKN
Subjt:  TWIENIVPVRKKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCTGAAGAGGGAAGTGTCGCTAGTGCAACAATAAAGAGGAAGGGGCCAATATCCCGCGTGTCAATTTGGCACGAGGATGCTGAAAACCATTCAAAGGAGAAGCT
GCCTCATGAGACAAAGGGTGAGGGAGAAATTCACAGTGCTGTCCCTTCACGAATGAAAACAAAGATTTTCATTACCCTCGATTCAAGCAAAGGCTCATTAAAGGTAAAGA
GACGTGACGTCATCTTTGCTAATCCTAAAGACAAAAGCTCAGAACAGGCAGAATATGAAACTTTATGTCACCACATCATCATCATCGAAGAATCAAAGAGCGAAATGTCT
GAAGAAGATGTGGATGACTCCCTGCTAACACTTGAAGATTGTGGTCAATCCATAGTGAATGAGCTCAAAGAAGTAAATCTTGGTAGCATAGAAGAGGGAGAGGAGGGCAA
ATATATGAGCTTACTCACCGAATACAGGGACATCTTTGCTTGGTCATATAGAGAGATGCCAGACCTTGATTCAAAAATTGAAGCAGAAGTCAATAAGTTGATTGAGGCAA
GATTCATTCGTGAGGTCAAGTACCCAACGTGGATAGAAAACATTGTTCCTGTTAGAAAGAAGAACGGATGTTCGCTAAAATTTGTTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCTGAAGAGGGAAGTGTCGCTAGTGCAACAATAAAGAGGAAGGGGCCAATATCCCGCGTGTCAATTTGGCACGAGGATGCTGAAAACCATTCAAAGGAGAAGCT
GCCTCATGAGACAAAGGGTGAGGGAGAAATTCACAGTGCTGTCCCTTCACGAATGAAAACAAAGATTTTCATTACCCTCGATTCAAGCAAAGGCTCATTAAAGGTAAAGA
GACGTGACGTCATCTTTGCTAATCCTAAAGACAAAAGCTCAGAACAGGCAGAATATGAAACTTTATGTCACCACATCATCATCATCGAAGAATCAAAGAGCGAAATGTCT
GAAGAAGATGTGGATGACTCCCTGCTAACACTTGAAGATTGTGGTCAATCCATAGTGAATGAGCTCAAAGAAGTAAATCTTGGTAGCATAGAAGAGGGAGAGGAGGGCAA
ATATATGAGCTTACTCACCGAATACAGGGACATCTTTGCTTGGTCATATAGAGAGATGCCAGACCTTGATTCAAAAATTGAAGCAGAAGTCAATAAGTTGATTGAGGCAA
GATTCATTCGTGAGGTCAAGTACCCAACGTGGATAGAAAACATTGTTCCTGTTAGAAAGAAGAACGGATGTTCGCTAAAATTTGTTCATTAA
Protein sequenceShow/hide protein sequence
MKAEEGSVASATIKRKGPISRVSIWHEDAENHSKEKLPHETKGEGEIHSAVPSRMKTKIFITLDSSKGSLKVKRRDVIFANPKDKSSEQAEYETLCHHIIIIEESKSEMS
EEDVDDSLLTLEDCGQSIVNELKEVNLGSIEEGEEGKYMSLLTEYRDIFAWSYREMPDLDSKIEAEVNKLIEARFIREVKYPTWIENIVPVRKKNGCSLKFVH