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Clc05G16730 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G16730
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGRAS domain-containing protein
Genome locationClcChr05:24543541..24545103
RNA-Seq ExpressionClc05G16730
SyntenyClc05G16730
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005202 - Transcription factor GRAS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2044227.1 hypothetical protein ES319_D01G074500v1 [Gossypium barbadense]1.5e-1275.47Show/hide
Query:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        DIT DMLD++P E LA+N PLQLHHTP+ESV++NNPRD LLRMVKSLS K+TT
Subjt:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

KAE8704050.1 Chitin-inducible gibberellin-responsive protein 1 [Hibiscus syriacus]3.9e-1374.07Show/hide
Query:  QDITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        +DIT DMLD++P E LA+N PLQLHHTP+ESV++NNPRD LLRMVKSLS K+TT
Subjt:  QDITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

PPD82534.1 hypothetical protein GOBAR_DD20520 [Gossypium barbadense]1.5e-1275.47Show/hide
Query:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        DIT DMLD++P E LA+N PLQLHHTP+ESV++NNPRD LLRMVKSLS K+TT
Subjt:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

XP_034678950.1 chitin-inducible gibberellin-responsive protein 1-like [Vitis riparia]8.6e-1375.47Show/hide
Query:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        DITL+MLD++P E LA+N PLQLHHTP+ESV++NNPRD LLRMVKSLS K+TT
Subjt:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

XP_039026831.1 chitin-inducible gibberellin-responsive protein 1-like [Hibiscus syriacus]6.6e-1374.07Show/hide
Query:  QDITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        +DIT DMLD++P E LA+N PLQLHHTP+ESV++NNPRD LLRMVKSLS K+TT
Subjt:  QDITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

TrEMBL top hitse value%identityAlignment
A0A0D2NJU0 GRAS domain-containing protein7.1e-1375.47Show/hide
Query:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        DIT DMLD++P E LA+N PLQLHHTP+ESV++NNPRD LLRMVKSLS K+TT
Subjt:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

A0A2P5YXD1 GRAS domain-containing protein7.1e-1375.47Show/hide
Query:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        DIT DMLD++P E LA+N PLQLHHTP+ESV++NNPRD LLRMVKSLS K+TT
Subjt:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

A0A6A2XX35 Chitin-inducible gibberellin-responsive protein 13.2e-1374.07Show/hide
Query:  QDITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        +DIT DMLD++P E LA+N PLQLHHTP+ESV++NNPRD LLRMVKSLS K+TT
Subjt:  QDITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

A0A6A3AF23 Chitin-inducible gibberellin-responsive protein 17.1e-1375.47Show/hide
Query:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        DIT DMLD++P E LA+N PLQLHHTP+ESV++NNPRD LLRMVKSLS K+TT
Subjt:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

A0A6A3AHI9 Chitin-inducible gibberellin-responsive protein 11.9e-1374.07Show/hide
Query:  QDITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        +DIT DMLD++P E LA+N PLQLHHTP+ESV++NNPRD LLRMVKSLS K+TT
Subjt:  QDITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

SwissProt top hitse value%identityAlignment
Q69VG1 Chitin-inducible gibberellin-responsive protein 11.5e-1264.91Show/hide
Query:  YADQDITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        YA Q +T +ML+I+P E L++N  LQLHHTP+ESV++NNPRD LLRMVK LS K+TT
Subjt:  YADQDITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

Q8GVE1 Chitin-inducible gibberellin-responsive protein 21.2e-0654.72Show/hide
Query:  LDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITTWKSLSS
        L + P E LA+N  L+LHH P+ESV+  N RD LLRMVKSLS K+ T   + S
Subjt:  LDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITTWKSLSS

Q8H125 Scarecrow-like protein 53.6e-0647.17Show/hide
Query:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        ++ ++ L ++  E LA+N PL LHH P+ESV + N RD LLR+VK LS  + T
Subjt:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

Q9LDL7 Scarecrow-like transcription factor PAT11.2e-0657.45Show/hide
Query:  LDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        L ++P E LA+N    LHH P+ESV+  N RD LLRMVKSLS K+ T
Subjt:  LDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

Q9S7H5 Scarecrow-like protein 213.3e-0750.94Show/hide
Query:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        ++ ++ LD++  E L +N    LHH P+ESV+M N RD LLRMVKSLS K+ T
Subjt:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

Arabidopsis top hitse value%identityAlignment
AT1G21450.1 SCARECROW-like 14.4e-0757.45Show/hide
Query:  LDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        L  KP ETL +N   QLHH P+ESV   N RD LL MVKSL+ K+ T
Subjt:  LDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

AT1G50600.1 scarecrow-like 52.6e-0747.17Show/hide
Query:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        ++ ++ L ++  E LA+N PL LHH P+ESV + N RD LLR+VK LS  + T
Subjt:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

AT2G04890.1 SCARECROW-like 212.3e-0850.94Show/hide
Query:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        ++ ++ LD++  E L +N    LHH P+ESV+M N RD LLRMVKSLS K+ T
Subjt:  DITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

AT5G48150.1 GRAS family transcription factor8.9e-0857.45Show/hide
Query:  LDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        L ++P E LA+N    LHH P+ESV+  N RD LLRMVKSLS K+ T
Subjt:  LDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT

AT5G48150.2 GRAS family transcription factor8.9e-0857.45Show/hide
Query:  LDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT
        L ++P E LA+N    LHH P+ESV+  N RD LLRMVKSLS K+ T
Subjt:  LDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGAATGTTGAGCAGTGCTATTGAGCTTACTCTTACCTATGCAGATCAAGACATCACGCTTGATATGCTTGACATCAAACCCAGGGAGACTTTGGCTATAAACTT
GCCATTGCAACTTCATCATACCCCAAACGAAAGCGTCAACATGAACAATCCACGTGACAATCTGCTGAGAATGGTGAAGTCATTATCCCTAAAGATTACTACTTGGAAAT
CTTTGAGTTCATTGATGTCACTCTACCAAGGAACAATAAGAACCGCATCAATGTCGAACAACATTGTTTGGAAAAAGATATCATTAATGTCATCGCTTGCGAGGGGAGCG
AATAAGAAGAGCACCATGAGCTCTTGGGAAGTGGAAATCGAGGTTGACAATGGCAGGTCCTTCCGCCGCCGCATTGTGCAGGTTCTTTCGCCGCAGCATTGTGCAGATCC
GTCCCCGCCACCATTGGTCCGTGTAGCAGCTCCGTCAGCCGCCGCCGTTAGTCCGTGTAGCAGCTCTGTCCACCGCCGTCGTCGGTCAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGAATGTTGAGCAGTGCTATTGAGCTTACTCTTACCTATGCAGATCAAGACATCACGCTTGATATGCTTGACATCAAACCCAGGGAGACTTTGGCTATAAACTT
GCCATTGCAACTTCATCATACCCCAAACGAAAGCGTCAACATGAACAATCCACGTGACAATCTGCTGAGAATGGTGAAGTCATTATCCCTAAAGATTACTACTTGGAAAT
CTTTGAGTTCATTGATGTCACTCTACCAAGGAACAATAAGAACCGCATCAATGTCGAACAACATTGTTTGGAAAAAGATATCATTAATGTCATCGCTTGCGAGGGGAGCG
AATAAGAAGAGCACCATGAGCTCTTGGGAAGTGGAAATCGAGGTTGACAATGGCAGGTCCTTCCGCCGCCGCATTGTGCAGGTTCTTTCGCCGCAGCATTGTGCAGATCC
GTCCCCGCCACCATTGGTCCGTGTAGCAGCTCCGTCAGCCGCCGCCGTTAGTCCGTGTAGCAGCTCTGTCCACCGCCGTCGTCGGTCAGTTTAG
Protein sequenceShow/hide protein sequence
MGGMLSSAIELTLTYADQDITLDMLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKITTWKSLSSLMSLYQGTIRTASMSNNIVWKKISLMSSLARGA
NKKSTMSSWEVEIEVDNGRSFRRRIVQVLSPQHCADPSPPPLVRVAAPSAAAVSPCSSSVHRRRRSV