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Clc05G16740 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G16740
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGRAS domain-containing protein
Genome locationClcChr05:24549110..24549498
RNA-Seq ExpressionClc05G16740
SyntenyClc05G16740
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005202 - Transcription factor GRAS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK25996.1 scarecrow-like protein 21 [Cucumis melo var. makuwa]1.4e-1685.19Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA
        MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA

XP_004151967.1 scarecrow-like protein 21 [Cucumis sativus]1.4e-1685.19Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA
        MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA

XP_008454576.1 PREDICTED: scarecrow-like protein 21 [Cucumis melo]1.4e-1685.19Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA
        MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA

XP_022940516.1 scarecrow-like protein 21 [Cucurbita moschata]1.5e-1581.48Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA
        M++FDNLVA ARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA

XP_038899119.1 scarecrow-like protein 21 [Benincasa hispida]6.7e-1683.33Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA
        M +FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA

TrEMBL top hitse value%identityAlignment
A0A0A0LD17 GRAS domain-containing protein6.6e-1785.19Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA
        MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA

A0A1S3BYH5 scarecrow-like protein 216.6e-1785.19Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA
        MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA

A0A5A7V8I4 Scarecrow-like protein 216.6e-1785.19Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA
        MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA

A0A5D3DQQ1 Scarecrow-like protein 216.6e-1785.19Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA
        MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA

A0A6J1IWJ4 scarecrow-like protein 217.3e-1681.48Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA
        M++FDNLVA ARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA

SwissProt top hitse value%identityAlignment
Q69VG1 Chitin-inducible gibberellin-responsive protein 11.2e-1267.31Show/hide
Query:  KEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP
        +EF  LV  ARGVVSI+G+P QRLGAY++EGLVAR   SG NIYR L  REP
Subjt:  KEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP

Q8GVE1 Chitin-inducible gibberellin-responsive protein 26.3e-0953.06Show/hide
Query:  DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP
        D ++   R +VS+ G+P +RLGAYMVEGLVAR   SG++IY+ L  +EP
Subjt:  DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP

Q8H125 Scarecrow-like protein 52.0e-0751.02Show/hide
Query:  DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP
        D L++  + +VS+ G+P QRLGAYM+EGLVAR   SG +IY+ L  ++P
Subjt:  DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP

Q9S7H5 Scarecrow-like protein 211.1e-0866.67Show/hide
Query:  RGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP
        RG+VSI G+P QRLGAYM+EGLVAR   SG +IY++L  REP
Subjt:  RGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP

Q9SDQ3 Scarecrow-like protein 11.6e-0752.83Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP
        ++E  ++V   R +VSI GDP QR+ AYMVEGL AR   SG  IYR L  +EP
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP

Arabidopsis top hitse value%identityAlignment
AT1G21450.1 SCARECROW-like 11.1e-0852.83Show/hide
Query:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP
        ++E  ++V   R +VSI GDP QR+ AYMVEGL AR   SG  IYR L  +EP
Subjt:  MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP

AT1G50600.1 scarecrow-like 51.4e-0851.02Show/hide
Query:  DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP
        D L++  + +VS+ G+P QRLGAYM+EGLVAR   SG +IY+ L  ++P
Subjt:  DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP

AT2G04890.1 SCARECROW-like 217.7e-1066.67Show/hide
Query:  RGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP
        RG+VSI G+P QRLGAYM+EGLVAR   SG +IY++L  REP
Subjt:  RGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP

AT4G17230.1 SCARECROW-like 131.6e-0758.14Show/hide
Query:  VVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPAIR
        +VS+ G P QRLG YM EGL AR E SG NIY++L   EP  R
Subjt:  VVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPAIR

AT5G48150.1 GRAS family transcription factor3.6e-0750Show/hide
Query:  NLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLN
        +++   R +VS+ G+P QRLGAY++EGLVA+   SG +IY+ LN
Subjt:  NLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAATTTGATAACTTGGTAGCCACAGCAAGAGGTGTCGTGTCTATCGATGGAGATCCATTCCAGCGTCTTGGCGCTTACATGGTGGAAGGGTTGGTGGCGAGGAA
AGAGGAATCGGGGGTGAATATATATCGGACTCTAAACTATAGAGAGCCTGCAATTCGGTTACATGGCAGTGAATGGGGCAATTATCTAGGCCTATGGAAACGAAGACCGC
ATCCACATCATAGACTTCCAGATTACTCAGGGGACGTAGTGGTTAACTCTTCTTCAGGCACTTGCAGCAAGGCCAAGTGGGCCTCCCCATGTGAGGATAACCGGTATCAT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAATTTGATAACTTGGTAGCCACAGCAAGAGGTGTCGTGTCTATCGATGGAGATCCATTCCAGCGTCTTGGCGCTTACATGGTGGAAGGGTTGGTGGCGAGGAA
AGAGGAATCGGGGGTGAATATATATCGGACTCTAAACTATAGAGAGCCTGCAATTCGGTTACATGGCAGTGAATGGGGCAATTATCTAGGCCTATGGAAACGAAGACCGC
ATCCACATCATAGACTTCCAGATTACTCAGGGGACGTAGTGGTTAACTCTTCTTCAGGCACTTGCAGCAAGGCCAAGTGGGCCTCCCCATGTGAGGATAACCGGTATCAT
TGA
Protein sequenceShow/hide protein sequence
MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPAIRLHGSEWGNYLGLWKRRPHPHHRLPDYSGDVVVNSSSGTCSKAKWASPCEDNRYH