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Clc05G16745 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G16745
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionscarecrow-like protein 21
Genome locationClcChr05:24549712..24550205
RNA-Seq ExpressionClc05G16745
SyntenyClc05G16745
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK25996.1 scarecrow-like protein 21 [Cucumis melo var. makuwa]2.4e-4668.07Show/hide
Query:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS
        MDSHQLF +GVNS A LS+ +   SVPSLP TLLGP KF+LS+SPALS  F SHFE DSF TTT+  S DQR SP+NLS LSP CNSSFE SS NQIASS
Subjt:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS

Query:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG
        YLDH+EDESRQ +SGSN FVYDG   ENISY          G DNEEVVSKP+V FG + R QMMG
Subjt:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG

XP_004151967.1 scarecrow-like protein 21 [Cucumis sativus]5.6e-4869.88Show/hide
Query:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS
        MDSHQLF +GVNS A LS+  S  SVPSLP TLLGP KF+LSNSPALS  F SHFE DSF TTT+ DS DQR SP+NLS LSP CNSSFE SS NQIASS
Subjt:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS

Query:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG
        YLD +EDESRQ YS SN FVYDGC TENISY          G DNEEVV+KP+V FG + R QMMG
Subjt:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG

XP_008454576.1 PREDICTED: scarecrow-like protein 21 [Cucumis melo]2.4e-4668.07Show/hide
Query:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS
        MDSHQLF +GVNS A LS+ +   SVPSLP TLLGP KF+LS+SPALS  F SHFE DSF TTT+  S DQR SP+NLS LSP CNSSFE SS NQIASS
Subjt:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS

Query:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG
        YLDH+EDESRQ +SGSN FVYDG   ENISY          G DNEEVVSKP+V FG + R QMMG
Subjt:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG

XP_022139645.1 scarecrow-like protein 21 [Momordica charantia]9.6e-4061.59Show/hide
Query:  MDSHQLFRYGVNSANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSFTTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASSYL
        MDSHQ+F +GVNSA +SY +SY SVPSLP T LGP  F+L NSP  S    SH +SDSFTT   DSQDQRYSP NLS LSP CNSSFE +S +  AS YL
Subjt:  MDSHQLFRYGVNSANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSFTTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASSYL

Query:  DHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG
        DH E ESR  YSG++ F Y+GC TENI Y          G DNEEV SKP+  FGE+SR QMMG
Subjt:  DHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG

XP_038899119.1 scarecrow-like protein 21 [Benincasa hispida]6.9e-4666.06Show/hide
Query:  MDSHQLFRYGVNSANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASSY
        MDSHQLF +GV+ A LSY +SY  VPSLP TLLGP KF+LS+SP LS  F SHFESDS  TTT+ DSQDQR SP+NLS  S  CNSSFE SS NQIAS Y
Subjt:  MDSHQLFRYGVNSANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASSY

Query:  LDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG
        LDH +DESRQFYSGSN F Y+GC  ENISY          G DNEEVVSKP+V    + R QMMG
Subjt:  LDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG

TrEMBL top hitse value%identityAlignment
A0A0A0LD17 GRAS domain-containing protein2.7e-4869.88Show/hide
Query:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS
        MDSHQLF +GVNS A LS+  S  SVPSLP TLLGP KF+LSNSPALS  F SHFE DSF TTT+ DS DQR SP+NLS LSP CNSSFE SS NQIASS
Subjt:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS

Query:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG
        YLD +EDESRQ YS SN FVYDGC TENISY          G DNEEVV+KP+V FG + R QMMG
Subjt:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG

A0A1S3BYH5 scarecrow-like protein 211.1e-4668.07Show/hide
Query:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS
        MDSHQLF +GVNS A LS+ +   SVPSLP TLLGP KF+LS+SPALS  F SHFE DSF TTT+  S DQR SP+NLS LSP CNSSFE SS NQIASS
Subjt:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS

Query:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG
        YLDH+EDESRQ +SGSN FVYDG   ENISY          G DNEEVVSKP+V FG + R QMMG
Subjt:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG

A0A5A7V8I4 Scarecrow-like protein 211.1e-4668.07Show/hide
Query:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS
        MDSHQLF +GVNS A LS+ +   SVPSLP TLLGP KF+LS+SPALS  F SHFE DSF TTT+  S DQR SP+NLS LSP CNSSFE SS NQIASS
Subjt:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS

Query:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG
        YLDH+EDESRQ +SGSN FVYDG   ENISY          G DNEEVVSKP+V FG + R QMMG
Subjt:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG

A0A5D3DQQ1 Scarecrow-like protein 211.1e-4668.07Show/hide
Query:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS
        MDSHQLF +GVNS A LS+ +   SVPSLP TLLGP KF+LS+SPALS  F SHFE DSF TTT+  S DQR SP+NLS LSP CNSSFE SS NQIASS
Subjt:  MDSHQLFRYGVNS-ANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSF-TTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASS

Query:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG
        YLDH+EDESRQ +SGSN FVYDG   ENISY          G DNEEVVSKP+V FG + R QMMG
Subjt:  YLDHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG

A0A6J1CCW3 scarecrow-like protein 214.6e-4061.59Show/hide
Query:  MDSHQLFRYGVNSANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSFTTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASSYL
        MDSHQ+F +GVNSA +SY +SY SVPSLP T LGP  F+L NSP  S    SH +SDSFTT   DSQDQRYSP NLS LSP CNSSFE +S +  AS YL
Subjt:  MDSHQLFRYGVNSANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSFTTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASSYL

Query:  DHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG
        DH E ESR  YSG++ F Y+GC TENI Y          G DNEEV SKP+  FGE+SR QMMG
Subjt:  DHYEDESRQFYSGSNTFVYDGCLTENISYECSN------GADNEEVVSKPNVLFGETSRQQMMG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTCATCAACTGTTTAGATATGGGGTCAATAGTGCTAATCTTTCTTATATAAATTCTTATTTCTCTGTTCCATCTTTACCTATTACTTTGCTTGGACCCTTCAA
ATTCAGCTTAAGTAATTCTCCAGCGTTATCTTCGCCATTTTTGTCGCATTTTGAATCAGATTCATTTACGACAACTTTGGGTGATAGTCAGGATCAAAGATACTCCCCTA
ATAATCTCTCTAGACTTAGCCCTTACTGTAATTCATCATTTGAAATGAGTAGCATTAATCAAATAGCCTCGTCGTATTTGGATCATTATGAGGATGAGAGTCGACAATTC
TATTCAGGGTCGAATACGTTTGTTTACGACGGATGCTTAACAGAGAACATAAGCTACGAGTGTTCTAATGGGGCGGATAATGAGGAAGTTGTGAGCAAGCCTAATGTTTT
GTTTGGAGAGACTAGCAGGCAACAGATGATGGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTCATCAACTGTTTAGATATGGGGTCAATAGTGCTAATCTTTCTTATATAAATTCTTATTTCTCTGTTCCATCTTTACCTATTACTTTGCTTGGACCCTTCAA
ATTCAGCTTAAGTAATTCTCCAGCGTTATCTTCGCCATTTTTGTCGCATTTTGAATCAGATTCATTTACGACAACTTTGGGTGATAGTCAGGATCAAAGATACTCCCCTA
ATAATCTCTCTAGACTTAGCCCTTACTGTAATTCATCATTTGAAATGAGTAGCATTAATCAAATAGCCTCGTCGTATTTGGATCATTATGAGGATGAGAGTCGACAATTC
TATTCAGGGTCGAATACGTTTGTTTACGACGGATGCTTAACAGAGAACATAAGCTACGAGTGTTCTAATGGGGCGGATAATGAGGAAGTTGTGAGCAAGCCTAATGTTTT
GTTTGGAGAGACTAGCAGGCAACAGATGATGGGGTAG
Protein sequenceShow/hide protein sequence
MDSHQLFRYGVNSANLSYINSYFSVPSLPITLLGPFKFSLSNSPALSSPFLSHFESDSFTTTLGDSQDQRYSPNNLSRLSPYCNSSFEMSSINQIASSYLDHYEDESRQF
YSGSNTFVYDGCLTENISYECSNGADNEEVVSKPNVLFGETSRQQMMG