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Clc05G16840 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G16840
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibulose-bisphosphate carboxylase large chain
Genome locationClcChr05:24864320..24867013
RNA-Seq ExpressionClc05G16840
SyntenyClc05G16840
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD2804612.1 hypothetical protein E3N88_37989 [Mikania micrantha]8.0e-4090.11Show/hide
Query:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
        MFQGLGCS IKAVR+LG ERRET+RSISGVG+RALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQR V+CP  DGATEVLRIQEKVTAR
Subjt:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
KAD3640920.1 hypothetical protein E3N88_30143 [Mikania micrantha]1.0e-3990.11Show/hide
Query:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
        MFQGLGCS IKAVR+LG ERRET+RSISGVG+RALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQR V+CP  DGATEVLRIQEKVTAR
Subjt:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
KAD7477686.1 hypothetical protein E3N88_00822 [Mikania micrantha]3.6e-4090.22Show/hide
Query:  SMFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
        SMFQGLGCS IKAVR+LG ERRET+RSISGVG+RALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQR V+CP  DGATEVLRIQEKVTAR
Subjt:  SMFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
QCE15173.1 hypothetical protein DEO72_LG11g2182 [Vigna unguiculata]3.3e-3884.62Show/hide
Query:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
        MFQGLGCS IKAVR+LG ERRET+RSISGVG+RALRGPFPSTRGPGRTHLWC SYRAHEPPVAQPRQRWV+CP  DGA EVLRIQEK + +
Subjt:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
QHO28132.1 uncharacterized protein DS421_7g214040 [Arachis hypogaea]8.0e-4088.04Show/hide
Query:  SMFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
        SMFQGLGCS IKAVR+LG ERRET+RSISGVG+RALRGPFPSTRGPGRTHLWC SYRAHEPPVAQPRQRWV CP  DGA E LRIQEKVTAR
Subjt:  SMFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
TrEMBL top hitse value%identityAlignment
A0A2N9G3L9 Uncharacterized protein4.1e-4291.3Show/hide
Query:  SMFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
        SMFQGLGCS IKAVR+LG ERRET+RSISGVG+RALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWV+CP  DGATEVLRIQEKVTAR
Subjt:  SMFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
A0A4D6NMW7 Uncharacterized protein1.6e-3884.62Show/hide
Query:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
        MFQGLGCS IKAVR+LG ERRET+RSISGVG+RALRGPFPSTRGPGRTHLWC SYRAHEPPVAQPRQRWV+CP  DGA EVLRIQEK + +
Subjt:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
A0A5N6LV43 Uncharacterized protein3.9e-4090.11Show/hide
Query:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
        MFQGLGCS IKAVR+LG ERRET+RSISGVG+RALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQR V+CP  DGATEVLRIQEKVTAR
Subjt:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
A0A5N6MKY7 Uncharacterized protein5.0e-4090.11Show/hide
Query:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
        MFQGLGCS IKAVR+LG ERRET+RSISGVG+RALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQR V+CP  DGATEVLRIQEKVTAR
Subjt:  MFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
A0A5N6Q0W5 Uncharacterized protein1.7e-4090.22Show/hide
Query:  SMFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
        SMFQGLGCS IKAVR+LG ERRET+RSISGVG+RALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQR V+CP  DGATEVLRIQEKVTAR
Subjt:  SMFQGLGCSSIKAVRDLGLERRETIRSISGVGIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGAAGCATCCAAGTCATCGCAGTCCATGCCATCACAGTCTAGCCAGGGTTCTTTGTTAGTCGTTCGAGGTCTATCGAGCACCGTTCAAGGTTCCAGATCTAAGAG
ATCAGTCCACGCCGTTTTAAGTTTCAACTTCAAATTGTTGTCGTCTAGATCTACTGCGGATGGAGTCAATCCACATGGAGATTTTAGCAGTTGGCCAGTGATGTTGGTGA
CGTATAATCTACCTCCAAGTATGTTCCAAGGGTTGGGTTGTTCGTCCATTAAAGCGGTACGTGATCTCGGTTTAGAACGTCGTGAGACAATTCGGTCCATATCCGGTGTG
GGTATTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCAGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCCCATGAGCCTCCGGTAGCACAGCCGAGACA
ACGATGGGTTATCTGCCCCTACGAGGATGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCACTGCGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGAAGCATCCAAGTCATCGCAGTCCATGCCATCACAGTCTAGCCAGGGTTCTTTGTTAGTCGTTCGAGGTCTATCGAGCACCGTTCAAGGTTCCAGATCTAAGAG
ATCAGTCCACGCCGTTTTAAGTTTCAACTTCAAATTGTTGTCGTCTAGATCTACTGCGGATGGAGTCAATCCACATGGAGATTTTAGCAGTTGGCCAGTGATGTTGGTGA
CGTATAATCTACCTCCAAGTATGTTCCAAGGGTTGGGTTGTTCGTCCATTAAAGCGGTACGTGATCTCGGTTTAGAACGTCGTGAGACAATTCGGTCCATATCCGGTGTG
GGTATTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCAGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCCCATGAGCCTCCGGTAGCACAGCCGAGACA
ACGATGGGTTATCTGCCCCTACGAGGATGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCACTGCGAGATGA
Protein sequenceShow/hide protein sequence
MFEASKSSQSMPSQSSQGSLLVVRGLSSTVQGSRSKRSVHAVLSFNFKLLSSRSTADGVNPHGDFSSWPVMLVTYNLPPSMFQGLGCSSIKAVRDLGLERRETIRSISGV
GIRALRGPFPSTRGPGRTHLWCTSYRAHEPPVAQPRQRWVICPYEDGATEVLRIQEKVTAR