; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G16895 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G16895
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag-pol polyprotein
Genome locationClcChr05:25093206..25093466
RNA-Seq ExpressionClc05G16895
SyntenyClc05G16895
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042420.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]1.6e-0950Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS
        + FRCRECEGFGHYQA+CP +L+RQ K Y  TLSD+D + + D D ++ A   C++  +S   S
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS

KAA0042878.1 uncharacterized protein E6C27_scaffold44G003930 [Cucumis melo var. makuwa]1.6e-0950.72Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTSP-SDI
        + FRCRECEGFGHYQA+CP +L+RQ K Y  TLSD+D + + D D  + A   C++  +S   S  SDI
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTSP-SDI

KAA0050476.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.6e-0946.84Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNV---TSPSDIKTPVVLEK
        + FRCRECEGFGHYQ +CP +LKRQ K Y  TLSD+D + + D D  + A   C++  +S V    S +D    + LEK
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNV---TSPSDIKTPVVLEK

KAA0060126.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.6e-0951.56Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS
        + FRCREC+GFGHYQ DCP +LKRQ K Y  TLSD+D + + D D  I A   C++  +S   S
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS

TYK08440.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]2.1e-0951.56Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS
        + FRCREC+GFGHYQ DCP +LKRQ K Y  TLSD+D + + D D  I A   C++  +S   S
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS

TrEMBL top hitse value%identityAlignment
A0A5A7TGG3 Gag-proteinase polyprotein7.9e-1050Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS
        + FRCRECEGFGHYQA+CP +L+RQ K Y  TLSD+D + + D D ++ A   C++  +S   S
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS

A0A5A7TJA6 Uncharacterized protein7.9e-1050.72Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTSP-SDI
        + FRCRECEGFGHYQA+CP +L+RQ K Y  TLSD+D + + D D  + A   C++  +S   S  SDI
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTSP-SDI

A0A5A7U8G9 Gag-pol polyprotein7.9e-1046.84Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNV---TSPSDIKTPVVLEK
        + FRCRECEGFGHYQ +CP +LKRQ K Y  TLSD+D + + D D  + A   C++  +S V    S +D    + LEK
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNV---TSPSDIKTPVVLEK

A0A5A7V0X1 Gag-pol polyprotein7.9e-1051.56Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS
        + FRCREC+GFGHYQ DCP +LKRQ K Y  TLSD+D + + D D  I A   C++  +S   S
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS

A0A5D3CAS2 Gag-proteinase polyprotein1.0e-0951.56Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS
        + FRCREC+GFGHYQ DCP +LKRQ K Y  TLSD+D + + D D  I A   C++  +S   S
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAGTAGTCAAGGATCGAGAGACAAAAGGTTCAGGTGTAGAGAATGTGAGGGATTTGGCCATTACCAAGCTGATTGTCCAAACTTCCTAAAAAGACAAAGC
AAGGGTTACACTGTAACACTATCTGATGATGACTATGAGTCAAACAGTGACTCTGATGAAGAAATTCGTGCTTTAATGAGATGCTTATCTCCTAAGGATTCCAAC
GTGACATCTCCTTCTGATATTAAAACTCCTGTGGTGCTTGAGAAGACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAGTAGTCAAGGATCGAGAGACAAAAGGTTCAGGTGTAGAGAATGTGAGGGATTTGGCCATTACCAAGCTGATTGTCCAAACTTCCTAAAAAGACAAAGC
AAGGGTTACACTGTAACACTATCTGATGATGACTATGAGTCAAACAGTGACTCTGATGAAGAAATTCGTGCTTTAATGAGATGCTTATCTCCTAAGGATTCCAAC
GTGACATCTCCTTCTGATATTAAAACTCCTGTGGTGCTTGAGAAGACCTAA
Protein sequenceShow/hide protein sequence
MVSSQGSRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTSPSDIKTPVVLEKT