CuGenDBv2

Gene ID	Clc05G17000
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Large proline-rich protein bag6-B isoform X1
Genome location	ClcChr05:25331944..25334526
RNA-Seq Expression	Clc05G17000
Synteny	Clc05G17000
Gene Ontology terms	GO:0030433 - ubiquitin-dependent ERAD pathway (biological process) GO:0071818 - BAT3 complex (cellular component) GO:0031593 - polyubiquitin modification-dependent protein binding (molecular function) GO:0051787 - misfolded protein binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008452931.1 PREDICTED: uncharacterized protein LOC103493795 isoform X1 [Cucumis melo]

1.6e-75

86.67

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Query:  MNRFERA--ISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSS
        MNRFERA  ISQNGG  PRFELPTNPQELQ+ ESL IVLRNAQ+LLSDYAI SLPRIAERFEQDGSS+DP VRGQIQEELVQVGLRMQ FGALLLDLGSS
Subjt:  MNRFERA--ISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSS

Query:  ILTLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ
        ILTLRLEQST+DLQD+A RVVS+NCPMDVFRA+VESSARISGSST DIAN LCTH +LA+EYLE+LASDI RRLQSNSEQ
Subjt:  ILTLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ

XP_008452933.1 PREDICTED: uncharacterized protein LOC103493795 isoform X2 [Cucumis melo]

2.3e-74

86.67

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Query:  MNRFERA--ISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSS
        MNRFERA  ISQNGG+ PRFELPTNPQELQ+ ESL IVLRNAQ+LLSDYAI SLPRIAERFEQDGSS+DP VRGQIQEELVQVGLRMQ FGALLLDLGSS
Subjt:  MNRFERA--ISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSS

Query:  ILTLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ
        ILTLRLEQST+DLQD+A RVVS+NCPMDVFRA+VESSARISGSST DIAN LCTH +LA+EYLE+LASDI RRLQSNSEQ
Subjt:  ILTLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ

XP_022975906.1 uncharacterized protein LOC111476470 isoform X1 [Cucurbita maxima]

1.4e-74

84.27

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Query:  MNRFERAISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSIL
        MNRFERAIS+NGGSL  FELPTNPQ+LQTT+SLGIVLRNAQ+LL DYA SSLPRIAERFE++GSSTDPTVRGQIQEELVQVGLRMQ FGALLLDLG+SIL
Subjt:  MNRFERAISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSIL

Query:  TLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ
         LRLEQSTID+QDV  RV+ SN PMDVFRA+VESSA+ISGSS++DIANELC+H TLAQEYLEML+SDINRRLQ+NSE+
Subjt:  TLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ

XP_023535553.1 uncharacterized protein LOC111796959 isoform X1 [Cucurbita pepo subsp. pepo]

2.1e-75

84.44

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Query:  MNRFERAISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSIL
        MNRFERAIS+NGGSL  FELPTNPQ+LQTT+SLGIVLRNAQ+LL DYA SSLPRIAERFE++GSSTDPTVRGQIQEELVQVGLRMQ FGALLLDLG+SIL
Subjt:  MNRFERAISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSIL

Query:  TLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQGN
         LRLEQSTID+QDV  RV+ SN PMDVFRA+VESSA+ISGSS++DIANELCTH TLAQEYLEML+SDINRRLQ+NSE  N
Subjt:  TLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQGN

XP_038899964.1 uncharacterized protein LOC120087140 isoform X1 [Benincasa hispida]

2.6e-81

91.11

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Query:  MNRFERAISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSIL
        MNRFERAISQNGGSLPRFELPTNPQELQT ESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQ+GLRMQ FGALLLDLGSSIL
Subjt:  MNRFERAISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSIL

Query:  TLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQGN
        TLRLEQSTIDLQD+A RVVS+NCPMDVFRA+VESSARISGSS  D+A ELCT  TLA+EYLEM ASDINRRLQSNSEQ N
Subjt:  TLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQGN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BUZ4 uncharacterized protein LOC103493795 isoform X2

1.1e-74

86.67

Show/hide

Query:  MNRFERA--ISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSS
        MNRFERA  ISQNGG+ PRFELPTNPQELQ+ ESL IVLRNAQ+LLSDYAI SLPRIAERFEQDGSS+DP VRGQIQEELVQVGLRMQ FGALLLDLGSS
Subjt:  MNRFERA--ISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSS

Query:  ILTLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ
        ILTLRLEQST+DLQD+A RVVS+NCPMDVFRA+VESSARISGSST DIAN LCTH +LA+EYLE+LASDI RRLQSNSEQ
Subjt:  ILTLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ

A0A1S3BV17 uncharacterized protein LOC103493795 isoform X1

7.8e-76

86.67

Show/hide

Query:  MNRFERA--ISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSS
        MNRFERA  ISQNGG  PRFELPTNPQELQ+ ESL IVLRNAQ+LLSDYAI SLPRIAERFEQDGSS+DP VRGQIQEELVQVGLRMQ FGALLLDLGSS
Subjt:  MNRFERA--ISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSS

Query:  ILTLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ
        ILTLRLEQST+DLQD+A RVVS+NCPMDVFRA+VESSARISGSST DIAN LCTH +LA+EYLE+LASDI RRLQSNSEQ
Subjt:  ILTLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ

A0A5A7VE91 Large proline-rich protein bag6-B isoform X1

7.8e-76

86.67

Show/hide

Query:  MNRFERA--ISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSS
        MNRFERA  ISQNGG  PRFELPTNPQELQ+ ESL IVLRNAQ+LLSDYAI SLPRIAERFEQDGSS+DP VRGQIQEELVQVGLRMQ FGALLLDLGSS
Subjt:  MNRFERA--ISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSS

Query:  ILTLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ
        ILTLRLEQST+DLQD+A RVVS+NCPMDVFRA+VESSARISGSST DIAN LCTH +LA+EYLE+LASDI RRLQSNSEQ
Subjt:  ILTLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ

A0A6J1F7P4 uncharacterized protein LOC111443105 isoform X1

7.3e-74

82.22

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Query:  MNRFERAISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSIL
        MNRFERAIS+NGGSL  FELPTNPQ+LQTT+SLG+VLRNAQ+LL DYA SSLPRIAERFE++GSSTDPTVRGQIQEELVQVGLRMQ FGALLLDLG+SIL
Subjt:  MNRFERAISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSIL

Query:  TLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQGN
         LRLEQSTID+QDV  RV+ S+ PMDVFRA+VESSA+ISGSS++DIANELC+H TLAQEYLEML+SDINRRLQ+ SE  N
Subjt:  TLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQGN

A0A6J1IFG5 uncharacterized protein LOC111476470 isoform X1

6.6e-75

84.27

Show/hide

Query:  MNRFERAISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSIL
        MNRFERAIS+NGGSL  FELPTNPQ+LQTT+SLGIVLRNAQ+LL DYA SSLPRIAERFE++GSSTDPTVRGQIQEELVQVGLRMQ FGALLLDLG+SIL
Subjt:  MNRFERAISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSIL

Query:  TLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ
         LRLEQSTID+QDV  RV+ SN PMDVFRA+VESSA+ISGSS++DIANELC+H TLAQEYLEML+SDINRRLQ+NSE+
Subjt:  TLRLEQSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQ

SwissProt top hits

e value

%identity

Alignment

D5LXJ0 Ubiquitin-like domain-containing protein CIP73

2.4e-05

31.82

Show/hide

Query:  LPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSILTLRLEQS
        L + P+ L +  SL  VL + +R++ + A   L ++A + E      DP  R   Q   ++ G+   + GA LL+LG + +TLRL Q+
Subjt:  LPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSILTLRLEQS

Arabidopsis top hits

e value

%identity

Alignment

AT5G42220.1 Ubiquitin-like superfamily protein

7.8e-28

58.12

Show/hide

Query:  MNRFERAISQNG----------GSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGA
        +NR E+A+SQNG          G  PR ELP N +   T E+L +VLRNAQ LLS   +SSL  IA R EQDGSS+DPT+R QIQ E VQVGL MQH GA
Subjt:  MNRFERAISQNG----------GSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGA

Query:  LLLDLGSSILTLRLEQS
        LLL+LG +ILTLR+  S
Subjt:  LLLDLGSSILTLRLEQS

Sequences

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CDS sequence

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ATGAACCGATTCGAGCGCGCAATATCTCAAAATGGTGGAAGTCTACCAAGGTTTGAACTGCCCACCAATCCTCAAGAATTGCAAACTACTGAATCTTTGGGTATT
GTTTTGCGAAATGCACAACGACTCCTAAGTGATTATGCCATATCTTCACTACCTCGTATTGCTGAGCGATTCGAGCAAGATGGGTCTTCAACTGATCCGACGGTG
AGGGGTCAAATCCAAGAAGAGTTAGTTCAAGTAGGCCTTAGAATGCAACATTTTGGAGCGCTTCTTCTGGATCTGGGGAGTTCAATCTTGACGCTTCGTTTGGAA
CAATCAACTATTGATCTCCAAGATGTTGCTCTAAGGGTTGTATCAAGCAATTGTCCAATGGATGTGTTTCGTGCTATGGTAGAGAGTTCAGCTCGAATTTCTGGG
AGTAGTACTGATGATATTGCTAATGAATTGTGCACCCATCACACTCTTGCTCAGGAATATTTAGAGATGTTAGCAAGTGATATAAACCGACGTCTTCAAAGCAAT
TCAGAACAGGGAAATTAA

mRNA sequence

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AAAAAAAAAAAAATGTCCTAAAGGATGAACCTCTACTCTCTAAGTATATCATATTCTTCCATTTTCTCTCTTTTCATTGGTGAATTCCATTTCTTTGCCTTCTAT
TCTTGATTTCTTTGACAACAATTTCTGAGTTCATGAACCGATTCGAGCGCGCAATATCTCAAAATGGTGGAAGTCTACCAAGGTTTGAACTGCCCACCAATCCTC
AAGAATTGCAAACTACTGAATCTTTGGGTATTGTTTTGCGAAATGCACAACGACTCCTAAGTGATTATGCCATATCTTCACTACCTCGTATTGCTGAGCGATTCG
AGCAAGATGGGTCTTCAACTGATCCGACGGTGAGGGGTCAAATCCAAGAAGAGTTAGTTCAAGTAGGCCTTAGAATGCAACATTTTGGAGCGCTTCTTCTGGATC
TGGGGAGTTCAATCTTGACGCTTCGTTTGGAACAATCAACTATTGATCTCCAAGATGTTGCTCTAAGGGTTGTATCAAGCAATTGTCCAATGGATGTGTTTCGTG
CTATGGTAGAGAGTTCAGCTCGAATTTCTGGGAGTAGTACTGATGATATTGCTAATGAATTGTGCACCCATCACACTCTTGCTCAGGAATATTTAGAGATGTTAG
CAAGTGATATAAACCGACGTCTTCAAAGCAATTCAGAACAGGGAAATTAATGCATTTTGTTGGAAGGATATTGGAGATTTGTGGGTGTTGAAGTCCAACAATAAT
GCCTTTTATTTTGTAATGTTCATCATTGGATATTAGCTCTCTCTCCACTTTATTTTTGAAGCTATTTGTCGCTAGAGGAGCAAGCAAGATCGGGCTTGTCACGTT
TGGGGTTGGCGTGGGAAACTTCCACCATGGAGCTAACCTTAATAATAGAAGGATTTGGCAGAAATATG

Protein sequence

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MNRFERAISQNGGSLPRFELPTNPQELQTTESLGIVLRNAQRLLSDYAISSLPRIAERFEQDGSSTDPTVRGQIQEELVQVGLRMQHFGALLLDLGSSILTLRLE
QSTIDLQDVALRVVSSNCPMDVFRAMVESSARISGSSTDDIANELCTHHTLAQEYLEMLASDINRRLQSNSEQGN

Clc05G17000 (gene) of Watermelon (cordophanus) v2 genome