; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G17100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G17100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein
Genome locationClcChr05:25474115..25475543
RNA-Seq ExpressionClc05G17100
SyntenyClc05G17100
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006749 - glutathione metabolic process (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0004364 - glutathione transferase activity (molecular function)
GO:0043295 - glutathione binding (molecular function)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024130.1 Mechanosensitive ion channel protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-5957.89Show/hide
Query:  PHFSFPSPSVNQFHPRHHKPPLLPSLPIADPAAPTESGRDSGDPNGNLLPEALQRI----VRFATS---------------------GEQSGQFSRL---
        P    P     Q   R   PP  P+LP+ADPAA T S   S     ++    +  I    VRFATS                     GE+SGQFS +   
Subjt:  PHFSFPSPSVNQFHPRHHKPPLLPSLPIADPAAPTESGRDSGDPNGNLLPEALQRI----VRFATS---------------------GEQSGQFSRL---

Query:  -----------------------SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKK
                               S NVKKVRLNSTL ALLDDPILADVPK PTL  VDTLISLELGSAMRISVLKLDGT IDV IMNSA LKDLKLAIKK
Subjt:  -----------------------SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKK

Query:  KVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSSALQDFWNPQQFSGAFRPIRHVKEFQKAF
        KVNEMEQSKMGHRHISWKHVWANFCLAH NEKILDDSSALQDF        AF P+ HVKEFQKAF
Subjt:  KVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSSALQDFWNPQQFSGAFRPIRHVKEFQKAF

XP_004145525.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus]6.1e-5696.67Show/hide
Query:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN
        SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDV IMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN
Subjt:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN

Query:  FCLAHRNEKILDDSSALQDF
        FCLAH NEK+LDDSS LQDF
Subjt:  FCLAHRNEKILDDSSALQDF

XP_008452908.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis melo]3.9e-5595.83Show/hide
Query:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN
        SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDV IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHVWAN
Subjt:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN

Query:  FCLAHRNEKILDDSSALQDF
        FCLAH NEKILDDSS LQDF
Subjt:  FCLAHRNEKILDDSSALQDF

XP_022140942.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Momordica charantia]8.2e-5391.67Show/hide
Query:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN
        SNNVKKVRLNSTLAALLDDPILADVPKNPTLS VDTLISLELGSAMRISVLKLDG AIDV IMNSATLKDLKL IKKKVN+MEQSKMGHRHISWKHVW N
Subjt:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN

Query:  FCLAHRNEKILDDSSALQDF
        FCLAH NEK+LD+ SALQDF
Subjt:  FCLAHRNEKILDDSSALQDF

XP_038898960.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Benincasa hispida]9.3e-5796.67Show/hide
Query:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN
        SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVN+MEQSKMGHRHISWKHVWAN
Subjt:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN

Query:  FCLAHRNEKILDDSSALQDF
        FCLAH NEKILDD+S LQDF
Subjt:  FCLAHRNEKILDDSSALQDF

TrEMBL top hitse value%identityAlignment
A0A0A0L4F3 Ubiquitin_4 domain-containing protein2.9e-5696.67Show/hide
Query:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN
        SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDV IMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN
Subjt:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN

Query:  FCLAHRNEKILDDSSALQDF
        FCLAH NEK+LDDSS LQDF
Subjt:  FCLAHRNEKILDDSSALQDF

A0A1S3BW55 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.9e-5595.83Show/hide
Query:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN
        SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDV IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHVWAN
Subjt:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN

Query:  FCLAHRNEKILDDSSALQDF
        FCLAH NEKILDDSS LQDF
Subjt:  FCLAHRNEKILDDSSALQDF

A0A5A7VCB2 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.9e-5595.83Show/hide
Query:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN
        SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDV IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHVWAN
Subjt:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN

Query:  FCLAHRNEKILDDSSALQDF
        FCLAH NEKILDDSS LQDF
Subjt:  FCLAHRNEKILDDSSALQDF

A0A6J1CH74 U11/U12 small nuclear ribonucleoprotein 25 kDa protein4.0e-5391.67Show/hide
Query:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN
        SNNVKKVRLNSTLAALLDDPILADVPKNPTLS VDTLISLELGSAMRISVLKLDG AIDV IMNSATLKDLKL IKKKVN+MEQSKMGHRHISWKHVW N
Subjt:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN

Query:  FCLAHRNEKILDDSSALQDF
        FCLAH NEK+LD+ SALQDF
Subjt:  FCLAHRNEKILDDSSALQDF

E5GCC9 Ubiquitin_4 domain-containing protein1.9e-5595.83Show/hide
Query:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN
        SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDV IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHVWAN
Subjt:  SNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWAN

Query:  FCLAHRNEKILDDSSALQDF
        FCLAH NEKILDDSS LQDF
Subjt:  FCLAHRNEKILDDSSALQDF

SwissProt top hitse value%identityAlignment
Q3ZBQ4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.9e-1538.1Show/hide
Query:  LLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSS
        ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + V ++ +AT+ DLK AI++ V   ++ + G +HISW +VW  + L    EK+ +D  
Subjt:  LLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSS

Query:  ALQDF
         L+D+
Subjt:  ALQDF

Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.4e-4273.04Show/hide
Query:  KKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLA
        K+ +L S L+ LL DPILADVP+NPTLS V TL+SLE GSAMR+SV+KLDG+++DV +MNSATLKDLKL IKKKVNEMEQ+ MGHRHISWKHVW+NFCL+
Subjt:  KKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLA

Query:  HRNEKILDDSSALQD
          NEK+LDD++ LQD
Subjt:  HRNEKILDDSSALQD

Q8VIK1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.9e-1538.1Show/hide
Query:  LLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSS
        ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + V ++ +AT+ DLK AI++ V   ++ + G +HISW +VW  + L    EK+ +D  
Subjt:  LLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSS

Query:  ALQDF
         L+D+
Subjt:  ALQDF

Q9BV90 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.3e-1639.81Show/hide
Query:  LAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILD
        LA ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + V ++ SAT+ DLK AI++ V   ++ + G +HISW +VW  + L    EK+ +
Subjt:  LAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILD

Query:  DSSALQDF
        D   L+D+
Subjt:  DSSALQDF

Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein1.0e-0827.5Show/hide
Query:  VKKVRLNSTLAALLDDPILADVPKNPTLS---HVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKK--KVNEMEQSKMGHRHISWKHVW
        V+  R +  L +L+D   L+    N   S      + + L     +++SV+KL+G+  DV +    ++ +LK A+++   ++ +E    GH  ISW HVW
Subjt:  VKKVRLNSTLAALLDDPILADVPKNPTLS---HVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKK--KVNEMEQSKMGHRHISWKHVW

Query:  ANFCLAHRNEKILDDSSALQ
         +FCL +R++++++D ++++
Subjt:  ANFCLAHRNEKILDDSSALQ

AT3G07860.1 Ubiquitin-like superfamily protein9.7e-4473.04Show/hide
Query:  KKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLA
        K+ +L S L+ LL DPILADVP+NPTLS V TL+SLE GSAMR+SV+KLDG+++DV +MNSATLKDLKL IKKKVNEMEQ+ MGHRHISWKHVW+NFCL+
Subjt:  KKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLA

Query:  HRNEKILDDSSALQD
          NEK+LDD++ LQD
Subjt:  HRNEKILDDSSALQD

AT4G32270.1 Ubiquitin-like superfamily protein4.1e-1030.85Show/hide
Query:  MRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSSALQDFWNPQQFSGAFRPIRHVKEF
        ++++VLKLDG++  + ++ +AT+ +LK+A++   + +  S  G   ISW HVW  FCL++ +++++++S  L +F          R IRH+  +
Subjt:  MRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSSALQDFWNPQQFSGAFRPIRHVKEF

AT4G32270.2 Ubiquitin-like superfamily protein2.9e-0830.85Show/hide
Query:  MRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSSALQDFWNPQQFSGAFRPIRHVKEF
        ++++VLKLDG++    ++ +AT+ +LK+A++   + +  S  G   ISW HVW  FCL++ +++++++S  L +F          R IRH+  +
Subjt:  MRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSSALQDFWNPQQFSGAFRPIRHVKEF

AT5G25340.1 Ubiquitin-like superfamily protein3.7e-1141.33Show/hide
Query:  MRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSSALQDF
        +R+SVLKLDG++ DV ++ SAT+ DLK+AI+   + +   K G   ISW HVW +FCL    +K++ D+  + ++
Subjt:  MRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSSALQDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAGCGTATTTGGACCAGCCCTCATTTCTCTTTCCCATCCCCTTCAGTGAATCAGTTTCACCCACGCCACCACAAACCACCTCTCCTTCCATCGCTTCCTATTGC
AGATCCGGCCGCGCCAACGGAATCCGGCCGAGACAGTGGTGACCCAAACGGCAATCTCCTCCCGGAAGCCCTGCAGAGAATTGTCAGATTCGCCACCTCCGGCGAACAGT
CCGGTCAATTTTCCCGTTTAAGCAACAACGTAAAGAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTCGACGATCCTATTCTCGCCGATGTCCCCAAGAATCCCACC
CTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATCTCCGTCCTTAAGCTCGATGGCACCGCCATTGATGTGCCGATCATGAACTCCGCCAC
ATTGAAAGACTTGAAGCTTGCGATCAAGAAGAAAGTAAACGAGATGGAACAATCAAAGATGGGGCATCGCCACATTTCATGGAAGCACGTGTGGGCTAATTTTTGCTTAG
CACACCGCAACGAGAAGATTCTCGATGATAGCTCCGCGCTTCAGGATTTTTGGAATCCGCAACAATTCTCAGGTGCATTTCGTCCCATACGTCATGTCAAAGAATTCCAG
AAGGCATTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAGCGTATTTGGACCAGCCCTCATTTCTCTTTCCCATCCCCTTCAGTGAATCAGTTTCACCCACGCCACCACAAACCACCTCTCCTTCCATCGCTTCCTATTGC
AGATCCGGCCGCGCCAACGGAATCCGGCCGAGACAGTGGTGACCCAAACGGCAATCTCCTCCCGGAAGCCCTGCAGAGAATTGTCAGATTCGCCACCTCCGGCGAACAGT
CCGGTCAATTTTCCCGTTTAAGCAACAACGTAAAGAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTCGACGATCCTATTCTCGCCGATGTCCCCAAGAATCCCACC
CTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATCTCCGTCCTTAAGCTCGATGGCACCGCCATTGATGTGCCGATCATGAACTCCGCCAC
ATTGAAAGACTTGAAGCTTGCGATCAAGAAGAAAGTAAACGAGATGGAACAATCAAAGATGGGGCATCGCCACATTTCATGGAAGCACGTGTGGGCTAATTTTTGCTTAG
CACACCGCAACGAGAAGATTCTCGATGATAGCTCCGCGCTTCAGGATTTTTGGAATCCGCAACAATTCTCAGGTGCATTTCGTCCCATACGTCATGTCAAAGAATTCCAG
AAGGCATTCTAG
Protein sequenceShow/hide protein sequence
MKERIWTSPHFSFPSPSVNQFHPRHHKPPLLPSLPIADPAAPTESGRDSGDPNGNLLPEALQRIVRFATSGEQSGQFSRLSNNVKKVRLNSTLAALLDDPILADVPKNPT
LSHVDTLISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHRNEKILDDSSALQDFWNPQQFSGAFRPIRHVKEFQ
KAF