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Clc05G17260 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G17260
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein Ycf2-like
Genome locationClcChr05:25890587..25892232
RNA-Seq ExpressionClc05G17260
SyntenyClc05G17260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032264.1 hypothetical protein E6C27_scaffold219G00980 [Cucumis melo var. makuwa]1.1e-1947.5Show/hide
Query:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE
        +I ER+P EKQSQ S+HEN+AP +SLQ LEERMNIHNL   E                            NQED +KN+ +  N+EVN E+Q  N    E
Subjt:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE

Query:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE
         E    +K  E+ + NEV ++  +PTIGESEE  NE+EL GK LME SL+LVED+LKI E
Subjt:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE

KAA0036929.1 hypothetical protein E6C27_scaffold86G00010 [Cucumis melo var. makuwa]8.2e-2047.5Show/hide
Query:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE
        +I ER+P EKQSQ S+HEN+AP +SLQ LEERMNIHNL   E                            NQED +KN+ +  N+EVN E+Q  N    E
Subjt:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE

Query:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE
         E    +K  E+ + NEV ++  +PTIGESEE  NE+EL GK LME SL+LVED+LKI E
Subjt:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE

KAA0067880.1 hypothetical protein E6C27_scaffold138G00340 [Cucumis melo var. makuwa]1.1e-2458.33Show/hide
Query:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGENQEDEEKNDNQQVNEEVNEEEQDKNIVKCEVETNEGDKIIEDDKENEVPEKVEYPTIG
        +I ER+P+EKQSQ S+HEN+AP +SLQ LEERMNIHNL   ENQED +KN+ +  N+EVN E+Q  N    E E    +K  E+ + NEV ++  +PTIG
Subjt:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGENQEDEEKNDNQQVNEEVNEEEQDKNIVKCEVETNEGDKIIEDDKENEVPEKVEYPTIG

Query:  ESEEHLNEKELRGKYLMEASLELVEDVLKIHE
        ESEE  NE+EL GK LME SL+LVEDVLKI E
Subjt:  ESEEHLNEKELRGKYLMEASLELVEDVLKIHE

TYJ96590.1 hypothetical protein E5676_scaffold1278G00080 [Cucumis melo var. makuwa]6.3e-2047.2Show/hide
Query:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE
        +I ER+P EKQSQ S+HEN+AP +SLQ LEERMNIHNL   E                            NQED +KN+ +  N+EVN E+Q  N    E
Subjt:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE

Query:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHEL
         E    +K  E+ + NEV ++  +PTIGESEE  NE+EL GK LME SL+LVED+LKI E+
Subjt:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHEL

TYK15460.1 hypothetical protein E5676_scaffold477G00300 [Cucumis melo var. makuwa]8.2e-2047.5Show/hide
Query:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE
        +I ER+P EKQSQ S+HEN+AP +SLQ LEERMNIHNL   E                            NQED +KN+ +  N+EVN E+Q  N    E
Subjt:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE

Query:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE
         E    +K  E+ + NEV ++  +PTIGESEE  NE+EL GK LME SL+LVED+LKI E
Subjt:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE

TrEMBL top hitse value%identityAlignment
A0A5A7SM53 Uncharacterized protein5.2e-2047.5Show/hide
Query:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE
        +I ER+P EKQSQ S+HEN+AP +SLQ LEERMNIHNL   E                            NQED +KN+ +  N+EVN E+Q  N    E
Subjt:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE

Query:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE
         E    +K  E+ + NEV ++  +PTIGESEE  NE+EL GK LME SL+LVED+LKI E
Subjt:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE

A0A5A7T6C2 Uncharacterized protein4.0e-2047.5Show/hide
Query:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE
        +I ER+P EKQSQ S+HEN+AP +SLQ LEERMNIHNL   E                            NQED +KN+ +  N+EVN E+Q  N    E
Subjt:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE

Query:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE
         E    +K  E+ + NEV ++  +PTIGESEE  NE+EL GK LME SL+LVED+LKI E
Subjt:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE

A0A5A7VKZ2 Uncharacterized protein5.3e-2558.33Show/hide
Query:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGENQEDEEKNDNQQVNEEVNEEEQDKNIVKCEVETNEGDKIIEDDKENEVPEKVEYPTIG
        +I ER+P+EKQSQ S+HEN+AP +SLQ LEERMNIHNL   ENQED +KN+ +  N+EVN E+Q  N    E E    +K  E+ + NEV ++  +PTIG
Subjt:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGENQEDEEKNDNQQVNEEVNEEEQDKNIVKCEVETNEGDKIIEDDKENEVPEKVEYPTIG

Query:  ESEEHLNEKELRGKYLMEASLELVEDVLKIHE
        ESEE  NE+EL GK LME SL+LVEDVLKI E
Subjt:  ESEEHLNEKELRGKYLMEASLELVEDVLKIHE

A0A5D3B9P7 Uncharacterized protein3.0e-2047.2Show/hide
Query:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE
        +I ER+P EKQSQ S+HEN+AP +SLQ LEERMNIHNL   E                            NQED +KN+ +  N+EVN E+Q  N    E
Subjt:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE

Query:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHEL
         E    +K  E+ + NEV ++  +PTIGESEE  NE+EL GK LME SL+LVED+LKI E+
Subjt:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHEL

A0A5D3CVR6 Uncharacterized protein4.0e-2047.5Show/hide
Query:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE
        +I ER+P EKQSQ S+HEN+AP +SLQ LEERMNIHNL   E                            NQED +KN+ +  N+EVN E+Q  N    E
Subjt:  VITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGE----------------------------NQEDEEKNDNQQVNEEVNEEEQDKNIVKCE

Query:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE
         E    +K  E+ + NEV ++  +PTIGESEE  NE+EL GK LME SL+LVED+LKI E
Subjt:  VETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNEKELRGKYLMEASLELVEDVLKIHE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGTAATTACTGAAAGAATACCAATGGAAAAACAATCTCAAGACTCATTCCATGAAAATAATGCTCCCCCAGTCAGTCTACAGTGTCTTGAGGAAAGGATGAACAT
TCATAACCTGCATGCTGGAGAGAATCAAGAAGATGAAGAAAAAAATGACAATCAACAAGTGAATGAAGAAGTGAATGAAGAAGAACAAGACAAAAATATTGTGAAATGTG
AGGTAGAAACGAATGAAGGAGACAAAATAATTGAAGATGACAAAGAAAATGAAGTTCCAGAAAAAGTAGAGTACCCAACGATTGGAGAGTCTGAAGAGCACTTGAATGAA
AAAGAATTACGTGGAAAATACTTAATGGAAGCAAGCTTGGAATTAGTTGAAGATGTGCTCAAAATTCATGAGTTGAGGGAGGCACGTGCCTCTAGCCCCTTGGTAGATTT
GCCCCTAATGACTCCTACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGTAATTACTGAAAGAATACCAATGGAAAAACAATCTCAAGACTCATTCCATGAAAATAATGCTCCCCCAGTCAGTCTACAGTGTCTTGAGGAAAGGATGAACAT
TCATAACCTGCATGCTGGAGAGAATCAAGAAGATGAAGAAAAAAATGACAATCAACAAGTGAATGAAGAAGTGAATGAAGAAGAACAAGACAAAAATATTGTGAAATGTG
AGGTAGAAACGAATGAAGGAGACAAAATAATTGAAGATGACAAAGAAAATGAAGTTCCAGAAAAAGTAGAGTACCCAACGATTGGAGAGTCTGAAGAGCACTTGAATGAA
AAAGAATTACGTGGAAAATACTTAATGGAAGCAAGCTTGGAATTAGTTGAAGATGTGCTCAAAATTCATGAGTTGAGGGAGGCACGTGCCTCTAGCCCCTTGGTAGATTT
GCCCCTAATGACTCCTACTTAA
Protein sequenceShow/hide protein sequence
MIVITERIPMEKQSQDSFHENNAPPVSLQCLEERMNIHNLHAGENQEDEEKNDNQQVNEEVNEEEQDKNIVKCEVETNEGDKIIEDDKENEVPEKVEYPTIGESEEHLNE
KELRGKYLMEASLELVEDVLKIHELREARASSPLVDLPLMTPT