CuGenDBv2

Gene ID	Clc05G17290
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Vacuolar protein sorting-associated protein 35
Genome location	ClcChr05:25925814..25926225
RNA-Seq Expression	Clc05G17290
Synteny	Clc05G17290
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0042147 - retrograde transport, endosome to Golgi (biological process) GO:0005770 - late endosome (cellular component) GO:0005829 - cytosol (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030906 - retromer, cargo-selective complex (cellular component)
InterPro domains	IPR005378 - Vacuolar protein sorting-associated protein 35 IPR042491 - Vacuolar protein sorting-associated protein 35, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

TYK31476.1 vacuolar protein sorting-associated protein 35B isoform X1 [Cucumis melo var. makuwa]

2.2e-27

91.67

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLYYFEKGNQQITNAAIQGLIELITTELQTDSPS   +PAPDAFFTSTLRYIQFQKQKGGVMGERYDSIK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

XP_008466471.1 PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Cucumis melo]

2.2e-27

91.67

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLYYFEKGNQQITNAAIQGLIELITTELQTDSPS   +PAPDAFFTSTLRYIQFQKQKGGVMGERYDSIK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

XP_022131851.1 vacuolar protein sorting-associated protein 35B-like [Momordica charantia]

1.5e-28

94.29

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLYYFEKGNQQITNAAIQGLIELITTELQTDSPST+PA DAFFTSTLRYIQFQKQKGGVMGERYDSIK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

XP_038898001.1 vacuolar protein sorting-associated protein 35B-like isoform X1 [Benincasa hispida]

6.7e-29

94.29

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLYYFEKGNQQITNAAIQGLIELITTELQTDSPS SPAPD+FFTSTLRYIQFQKQKGGVMGERYDSIK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

XP_038898002.1 vacuolar protein sorting-associated protein 35B-like isoform X2 [Benincasa hispida]

6.7e-29

94.29

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLYYFEKGNQQITNAAIQGLIELITTELQTDSPS SPAPD+FFTSTLRYIQFQKQKGGVMGERYDSIK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CRD2 Vacuolar protein sorting-associated protein 35

1.1e-27

91.67

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLYYFEKGNQQITNAAIQGLIELITTELQTDSPS   +PAPDAFFTSTLRYIQFQKQKGGVMGERYDSIK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

A0A1S3CSM2 Vacuolar protein sorting-associated protein 35

1.1e-27

91.67

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLYYFEKGNQQITNAAIQGLIELITTELQTDSPS   +PAPDAFFTSTLRYIQFQKQKGGVMGERYDSIK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

A0A5A7VC69 Vacuolar protein sorting-associated protein 35

1.1e-27

91.67

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLYYFEKGNQQITNAAIQGLIELITTELQTDSPS   +PAPDAFFTSTLRYIQFQKQKGGVMGERYDSIK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

A0A5D3E728 Vacuolar protein sorting-associated protein 35B isoform X1

1.1e-27

91.67

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLYYFEKGNQQITNAAIQGLIELITTELQTDSPS   +PAPDAFFTSTLRYIQFQKQKGGVMGERYDSIK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPST--SPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

A0A6J1BQM1 Vacuolar protein sorting-associated protein 35

7.3e-29

94.29

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLYYFEKGNQQITNAAIQGLIELITTELQTDSPST+PA DAFFTSTLRYIQFQKQKGGVMGERYDSIK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

SwissProt top hits

e value

%identity

Alignment

A8R7K9 Vacuolar protein sorting-associated protein 35C

4.3e-10

47.22

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQK-QKGGVMGERYDSIKLE
        +YLY+ EKGNQQ+T   I+ L ELI +E +       P    F  STLRYI+FQ+ Q+ G M E+Y+ IK+E
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQK-QKGGVMGERYDSIKLE

F4I0P8 Vacuolar protein sorting-associated protein 35B

1.9e-18

62.86

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +Y+Y+FEKGN  IT + IQ LIELI  E+Q+D+ +T+   D FFTSTLRYI+F KQKGG+MGE+YD IKL
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

Q7X659 Vacuolar protein sorting-associated protein 35A

2.3e-11

45.71

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLY++EKG  QIT  +++ LI+LI  E   +S  + P+ ++FF +TL +++FQKQK G +GERY +IK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

Arabidopsis top hits

e value

%identity

Alignment

AT1G75850.1 VPS35 homolog B

1.4e-19

62.86

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +Y+Y+FEKGN  IT + IQ LIELI  E+Q+D+ +T+   D FFTSTLRYI+F KQKGG+MGE+YD IKL
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

AT2G17790.1 VPS35 homolog A

1.6e-12

45.71

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL
        +YLY++EKG  QIT  +++ LI+LI  E   +S  + P+ ++FF +TL +++FQKQK G +GERY +IK+
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKL

AT3G51310.1 VPS35 homolog C

3.0e-11

47.22

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Query:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQK-QKGGVMGERYDSIKLE
        +YLY+ EKGNQQ+T   I+ L ELI +E +       P    F  STLRYI+FQ+ Q+ G M E+Y+ IK+E
Subjt:  RYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQK-QKGGVMGERYDSIKLE

Sequences

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CDS sequence

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ATGCATTTCAGGTACCTCTACTATTTCGAGAAAGGAAACCAGCAGATTACAAATGCTGCAATCCAAGGCTTGATTGAATTAATAACAACTGAATTGCAGACCGACTCCCC
GAGCACCAGTCCTGCCCCAGATGCATTCTTTACCAGCACACTTCGCTACATTCAGTTCCAGAAACAGAAAGGTGGTGTCATGGGTGAAAGATATGATTCTATCAAGTTGG
AAGGGAAAGGGGAGCTTGTGCATTTGTGA

mRNA sequence

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Protein sequence

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MHFRYLYYFEKGNQQITNAAIQGLIELITTELQTDSPSTSPAPDAFFTSTLRYIQFQKQKGGVMGERYDSIKLEGKGELVHL

Clc05G17290 (gene) of Watermelon (cordophanus) v2 genome