CuGenDBv2

Gene ID	Clc05G18300
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	homeobox protein knotted-1-like 3 isoform X3
Genome location	ClcChr05:27354560..27355150
RNA-Seq Expression	Clc05G18300
Synteny	Clc05G18300
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

TYK19983.1 homeobox protein knotted-1-like 3 isoform X3 [Cucumis melo var. makuwa]

1.8e-82

92.27

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Query:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF
        MAYHNHLSQDLPLHFSD HHQNQPLSD +SLR ILPDQLP  H+SPDPKS QPHHHHHH HPLQTAPNWLNNALLRNQNPHSH+STD TAT AAAANTNF
Subjt:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF

Query:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG
        LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGD+KNDANSGDGLNKSEGMVME G
Subjt:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG

XP_008452886.1 PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Cucumis melo]

1.8e-82

92.27

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Query:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF
        MAYHNHLSQDLPLHFSD HHQNQPLSD +SLR ILPDQLP  H+SPDPKS QPHHHHHH HPLQTAPNWLNNALLRNQNPHSH+STD TAT AAAANTNF
Subjt:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF

Query:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG
        LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGD+KNDANSGDGLNKSEGMVME G
Subjt:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG

XP_038897867.1 homeobox protein knotted-1-like 3 isoform X1 [Benincasa hispida]

3.3e-84

90.37

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Query:  MAYHNHLSQDLPLHFSD--------HHQNQPLSDT-SLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAA
        MAYHNHLSQDLPLHFSD        HHQNQPLSDT SLR ILPDQLPG HSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDT  T  A
Subjt:  MAYHNHLSQDLPLHFSD--------HHQNQPLSDT-SLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAA

Query:  AANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG
        AANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATA LSHDSGD+KNDANSGDGLNKSEGMVME G
Subjt:  AANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG

XP_038897869.1 homeobox protein knotted-1-like 3 isoform X2 [Benincasa hispida]

3.3e-84

90.37

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Query:  MAYHNHLSQDLPLHFSD--------HHQNQPLSDT-SLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAA
        MAYHNHLSQDLPLHFSD        HHQNQPLSDT SLR ILPDQLPG HSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDT  T  A
Subjt:  MAYHNHLSQDLPLHFSD--------HHQNQPLSDT-SLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAA

Query:  AANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG
        AANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATA LSHDSGD+KNDANSGDGLNKSEGMVME G
Subjt:  AANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG

XP_038897870.1 homeobox protein knotted-1-like 3 isoform X3 [Benincasa hispida]

3.3e-84

90.37

Show/hide

Query:  MAYHNHLSQDLPLHFSD--------HHQNQPLSDT-SLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAA
        MAYHNHLSQDLPLHFSD        HHQNQPLSDT SLR ILPDQLPG HSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDT  T  A
Subjt:  MAYHNHLSQDLPLHFSD--------HHQNQPLSDT-SLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAA

Query:  AANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG
        AANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATA LSHDSGD+KNDANSGDGLNKSEGMVME G
Subjt:  AANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BUC9 homeobox protein knotted-1-like 3 isoform X2

8.7e-83

92.27

Show/hide

Query:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF
        MAYHNHLSQDLPLHFSD HHQNQPLSD +SLR ILPDQLP  H+SPDPKS QPHHHHHH HPLQTAPNWLNNALLRNQNPHSH+STD TAT AAAANTNF
Subjt:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF

Query:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG
        LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGD+KNDANSGDGLNKSEGMVME G
Subjt:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG

A0A1S3BUY8 homeobox protein knotted-1-like 3 isoform X3

8.7e-83

92.27

Show/hide

Query:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF
        MAYHNHLSQDLPLHFSD HHQNQPLSD +SLR ILPDQLP  H+SPDPKS QPHHHHHH HPLQTAPNWLNNALLRNQNPHSH+STD TAT AAAANTNF
Subjt:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF

Query:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG
        LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGD+KNDANSGDGLNKSEGMVME G
Subjt:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG

A0A1S3BVQ4 homeobox protein knotted-1-like 3 isoform X1

8.7e-83

92.27

Show/hide

Query:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF
        MAYHNHLSQDLPLHFSD HHQNQPLSD +SLR ILPDQLP  H+SPDPKS QPHHHHHH HPLQTAPNWLNNALLRNQNPHSH+STD TAT AAAANTNF
Subjt:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF

Query:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG
        LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGD+KNDANSGDGLNKSEGMVME G
Subjt:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG

A0A5A7VGG8 Homeobox protein knotted-1-like 3 isoform X1

8.7e-83

92.27

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Query:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF
        MAYHNHLSQDLPLHFSD HHQNQPLSD +SLR ILPDQLP  H+SPDPKS QPHHHHHH HPLQTAPNWLNNALLRNQNPHSH+STD TAT AAAANTNF
Subjt:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF

Query:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG
        LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGD+KNDANSGDGLNKSEGMVME G
Subjt:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG

A0A5D3D8X2 Homeobox protein knotted-1-like 3 isoform X3

8.7e-83

92.27

Show/hide

Query:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF
        MAYHNHLSQDLPLHFSD HHQNQPLSD +SLR ILPDQLP  H+SPDPKS QPHHHHHH HPLQTAPNWLNNALLRNQNPHSH+STD TAT AAAANTNF
Subjt:  MAYHNHLSQDLPLHFSD-HHQNQPLSD-TSLRTILPDQLPGAHSSPDPKSHQPHHHHHH-HPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNF

Query:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG
        LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGD+KNDANSGDGLNKSEGMVME G
Subjt:  LNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETG

SwissProt top hits

e value

%identity

Alignment

O04136 Homeobox protein knotted-1-like 3

1.2e-28

52.72

Show/hide

Query:  MAYHNHLSQDLPL-HFSD--HHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAAN---
        MAYHNHLSQDLPL HF+D  HHQ+Q                     PDP S  P  HH   P   APNWLN+ALLRN       +TDT  T +  AN   
Subjt:  MAYHNHLSQDLPL-HFSD--HHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAAN---

Query:  ---TNFLNLHTTASDSTVSHSSNQWLS---RPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEG
           +NFLNLH TASDS  S +SNQWLS   RPILHRNHSDV DDV    AGD+MI    AALSHDS D+K D+     LNK+EG
Subjt:  ---TNFLNLHTTASDSTVSHSSNQWLS---RPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEG

O22300 Homeobox protein knotted-1-like LET12

4.5e-04

29.71

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Query:  MAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYS-----TDTTATAAAAANT
        M + +H SQ++ LH     Q Q   +  LR++LP+               PHH     P    P WLN +LLR Q  HS +      +   A AA A   
Subjt:  MAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYS-----TDTTATAAAAANT

Query:  NFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKS
        NFL+L T+ SDS+   +SNQWLS        S+           ++M  A   +  H  G  +N+ N+ +  N +
Subjt:  NFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCGTATCACAATCACCTCTCACAAGATCTTCCTCTTCACTTCTCTGACCACCACCAAAATCAGCCTCTCTCTGATACTTCTCTCCGTACCATTTTGCCGGAC
CAACTTCCCGGCGCCCACTCCTCACCGGACCCCAAGTCTCACCAACCCCATCACCACCATCACCATCATCCGCTTCAGACGGCACCGAATTGGCTCAACAACGCA
CTTCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCACCGCCACCGCCGCCGCCGCGGCCAATACTAATTTCCTTAACCTTCACACCACTGCATCC
GATTCCACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGCCCGATCCTCCACCGTAACCACAGCGATGTCATCGACGATGTCGCCGCTGCCGCTGCCGGTGAT
GCTATGATCGGTGCTGCCACTGCTGCGCTCTCTCACGATTCTGGCGACATGAAGAACGATGCTAATAGCGGGGATGGATTGAACAAGAGCGAGGGTATGGTGATG
GAAACTGGGTGCCGGCGGTGA

mRNA sequence

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GACCCATTTCTCAAATACCTCGTTTCCTTCTCTCTCCCCTTTCCCATGGCGTATCACAATCACCTCTCACAAGATCTTCCTCTTCACTTCTCTGACCACCACCAA
AATCAGCCTCTCTCTGATACTTCTCTCCGTACCATTTTGCCGGACCAACTTCCCGGCGCCCACTCCTCACCGGACCCCAAGTCTCACCAACCCCATCACCACCAT
CACCATCATCCGCTTCAGACGGCACCGAATTGGCTCAACAACGCACTTCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCACCGCCACCGCCGCC
GCCGCGGCCAATACTAATTTCCTTAACCTTCACACCACTGCATCCGATTCCACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGCCCGATCCTCCACCGTAAC
CACAGCGATGTCATCGACGATGTCGCCGCTGCCGCTGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTCTCTCACGATTCTGGCGACATGAAGAACGAT
GCTAATAGCGGGGATGGATTGAACAAGAGCGAGGGTATGGTGATGGAAACTGGGTGCCGGCGGTGA

Protein sequence

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MAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNFLNLHTTAS
DSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETGCRR

Clc05G18300 (gene) of Watermelon (cordophanus) v2 genome