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Clc05G18320 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G18320
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA ligase
Genome locationClcChr05:27375903..27376913
RNA-Seq ExpressionClc05G18320
SyntenyClc05G18320
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-4785.09Show/hide
Query:  MLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF
        MLN+Y PFSFT KLKSSI CFR DHGD  E E DSSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEF
Subjt:  MLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF

Query:  PIRDFTSRLPASPP
        PIRDF SRLPASPP
Subjt:  PIRDFTSRLPASPP

XP_022138148.1 uncharacterized protein LOC111009386 [Momordica charantia]1.9e-4078.45Show/hide
Query:  MMLNEY--SPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDD
        M+ NEY  SPFSFTHKLKSSI CFR DHGDL + ED++S  +PRSPLKS ASE  ELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MMLNEY--SPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDD

Query:  DEFPIRDFTSRLPASP
        D+FPIRDF SRLPASP
Subjt:  DEFPIRDFTSRLPASP

XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]2.1e-4785.22Show/hide
Query:  MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLN+Y PFSFT KLKSSI CFR DHGD  E E DSSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP

XP_022981208.1 uncharacterized protein LOC111480417 [Cucurbita maxima]4.2e-4885.22Show/hide
Query:  MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLNEY PFSFT KLKSSIRCFR DH D  E+EDDSSP TPRSPLKSMA+E PE+R MCRNLVAR  R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP

XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]1.2e-4785.96Show/hide
Query:  MLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF
        MLN+Y PFSFT KLKSSI CFR DHGD  E EDDSSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEF
Subjt:  MLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF

Query:  PIRDFTSRLPASPP
        PIRDF SRLPASPP
Subjt:  PIRDFTSRLPASPP

TrEMBL top hitse value%identityAlignment
A0A0A0L4E2 Uncharacterized protein9.4e-3876.52Show/hide
Query:  MLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        M N Y+PFSFTHKLKS I CFRPDH D +  ++ SSPT+P   LKSM S+LPELR MCR+LVAR S  SRRRYHHS DFRYDPSSYALNFEDEQ+R DDE
Subjt:  MLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDFTSRLPASPP
Subjt:  FPIRDFTSRLPASPP

A0A5A7VBS3 DNA ligase2.1e-3776.07Show/hide
Query:  MLNEYSPFSFTHKLKSSI-RCFRPDH-GDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDD
        M N Y+PFSFTHKLKSSI  CFRPDH  +L E EDD+        LKSM S+LPELR MCR+LVAR S  SRRRYHHSADFRYDPSSYALNFEDEQ+RDD
Subjt:  MLNEYSPFSFTHKLKSSI-RCFRPDH-GDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDD

Query:  DEFPIRDFTSRLPASPP
        +EFPIRDFTSRLPASPP
Subjt:  DEFPIRDFTSRLPASPP

A0A6J1CC83 uncharacterized protein LOC1110093869.1e-4178.45Show/hide
Query:  MMLNEY--SPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDD
        M+ NEY  SPFSFTHKLKSSI CFR DHGDL + ED++S  +PRSPLKS ASE  ELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MMLNEY--SPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDD

Query:  DEFPIRDFTSRLPASP
        D+FPIRDF SRLPASP
Subjt:  DEFPIRDFTSRLPASP

A0A6J1FP70 uncharacterized protein LOC1114460221.0e-4785.22Show/hide
Query:  MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLN+Y PFSFT KLKSSI CFR DHGD  E E DSSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP

A0A6J1J1H3 uncharacterized protein LOC1114804172.0e-4885.22Show/hide
Query:  MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLNEY PFSFT KLKSSIRCFR DH D  E+EDDSSP TPRSPLKSMA+E PE+R MCRNLVAR  R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G48020.1 unknown protein2.3e-0442.86Show/hide
Query:  RNLVARFSRSRRR---YHHSADFRYDPSSYALNFEDEQIRDDDEF---PIRDFTSRLPASPPA
        +  + RF+R  RR   +  S  FRYDP SY L+FEDE   DDDE     +R F+ R  + P A
Subjt:  RNLVARFSRSRRR---YHHSADFRYDPSSYALNFEDEQIRDDDEF---PIRDFTSRLPASPPA

AT5G11070.1 unknown protein2.8e-1045.83Show/hide
Query:  TPRSP---LKSMASELPELREMCRNLVAR-----------FSRSRRRYHHS----ADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPAK
        TPRSP   LKS A EL ELR+ CR + +R           ++     +HHS     DF YDP SYALNFED  +R DD+    +FT+RLP SP  K
Subjt:  TPRSP---LKSMASELPELREMCRNLVAR-----------FSRSRRRYHHS----ADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPAK

AT5G35090.1 unknown protein1.4e-0937.31Show/hide
Query:  SFTHKLKSSI---RCFR-PDHGDLDETEDD--SSPTTPRSPLKS-----MASELPEL-------REMCRNLVARF--------SRSRRRYHHSADFRYDP
        S   KLKS      CFR  +H   D   DD  SSP T     +S     M ++ P L        E C++L+ R            +    H+ADF YDP
Subjt:  SFTHKLKSSI---RCFR-PDHGDLDETEDD--SSPTTPRSPLKS-----MASELPEL-------REMCRNLVARF--------SRSRRRYHHSADFRYDP

Query:  SSYALNFEDEQIRDD-DEFPIRDFTSRLPASPPA
        SSYALNF+     D+ D FP+R+F++RLP SPP+
Subjt:  SSYALNFEDEQIRDD-DEFPIRDFTSRLPASPPA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTGAACGAGTACAGTCCATTTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTC
TCCAACAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGAAATGTGCCGGAATCTTGTCGCTCGGTTCAGCCGGAGTCGCCGACGGTATC
ATCACTCCGCCGATTTCCGATACGATCCTTCTAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGTGACGATGATGAGTTTCCGATTAGGGATTTCACTTCGAGATTA
CCGGCGTCGCCGCCAGCGAAATGA
mRNA sequenceShow/hide mRNA sequence
CTCCTTCCTAACCTACTTTTGAGAGCGAAACAGCCGCAAATATCTATCCTCGATCTTATCTGTCCCTTCATTCTTCTTCTTCTTCTTCCCACAAAATCTCTATATATATC
CCTTCCATTTCCCCAATTCCATCAATACTTCTTAGTTCTCATTCATTTTTCATCTCTCTCTCTGTATAGACACTCAAAAATTTTCACAACATTGATTTTCATCTTCATGA
TGTTGAACGAGTACAGTCCATTTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTCTCCA
ACAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGAAATGTGCCGGAATCTTGTCGCTCGGTTCAGCCGGAGTCGCCGACGGTATCATCA
CTCCGCCGATTTCCGATACGATCCTTCTAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGTGACGATGATGAGTTTCCGATTAGGGATTTCACTTCGAGATTACCGG
CGTCGCCGCCAGCGAAATGAGTAGTAGTGAATTGGCATTACCACTGCCGCCTGTAAATCTCTTGCGATTTTGAAGCGATGGGATTTGGGAATCTCCAGAGTCTCTATCCA
TTGATTGTAACTGTATACTGTAATTTGCTATGGTGTTCTTCGTTGAGATAAATGTTTAAATATCTAAAGGCTCGCTAATTATTCTTTCTATTAAAATACTGATAATAATT
GCCGATTATATATCTCTCATCTCGTTTCATTTCGATAAACTTTAATTTGTTCGTTAGAACCCTGAATTATGAATGTATTTTCGTTAGATTATTGTTATGTGCGTCCATCG
ATCATTATTGTTCGTTACGAACTAGAAAAAAAATGGAATCAATGTAATAGTTACGCTGAAACCTCTTTTATTGATTATCAATTTGAAAACGGCAATAAAAATGGTCAGTC
CAACTTCATCATGGATGTTTA
Protein sequenceShow/hide protein sequence
MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRL
PASPPAK