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Clc05G18340 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G18340
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionneurochondrin homolog isoform X1
Genome locationClcChr05:27415423..27420481
RNA-Seq ExpressionClc05G18340
SyntenyClc05G18340
Gene Ontology termsNA
InterPro domainsIPR008709 - Neurochondrin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022935920.1 uncharacterized protein LOC111442684 isoform X1 [Cucurbita moschata]1.2e-4892.23Show/hide
Query:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA
        MLS+EGEDEQSPFNS+CFLLPMLCQITMNVEGCKTLVSSGGLAAVV+CL++LIHK+GGW+DNDGSIFLACDTILNVLLKKELAGLLCGESSF+HLLEAIA
Subjt:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA

Query:  NST
        NST
Subjt:  NST
XP_022976133.1 neurochondrin homolog isoform X1 [Cucurbita maxima]1.2e-4892.23Show/hide
Query:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA
        MLS+EGEDEQSPFNS+CFLLPMLCQITMNVEGCKTLVSSGGLAAVV+CL++LIHK+GGW+DNDGSIFLACDTILNVLLKKELAGLLCGESSF+HLLEAIA
Subjt:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA

Query:  NST
        NST
Subjt:  NST
XP_022976134.1 neurochondrin homolog isoform X2 [Cucurbita maxima]1.2e-4892.23Show/hide
Query:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA
        MLS+EGEDEQSPFNS+CFLLPMLCQITMNVEGCKTLVSSGGLAAVV+CL++LIHK+GGW+DNDGSIFLACDTILNVLLKKELAGLLCGESSF+HLLEAIA
Subjt:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA

Query:  NST
        NST
Subjt:  NST
XP_023536100.1 uncharacterized protein LOC111797347 isoform X1 [Cucurbita pepo subsp. pepo]1.2e-4892.23Show/hide
Query:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA
        MLS+EGEDEQSPFNS+CFLLPMLCQITMNVEGCKTLVSSGGLAAVV+CL++LIHK+GGW+DNDGSIFLACDTILNVLLKKELAGLLCGESSF+HLLEAIA
Subjt:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA

Query:  NST
        NST
Subjt:  NST
XP_023536101.1 uncharacterized protein LOC111797347 isoform X2 [Cucurbita pepo subsp. pepo]1.2e-4892.23Show/hide
Query:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA
        MLS+EGEDEQSPFNS+CFLLPMLCQITMNVEGCKTLVSSGGLAAVV+CL++LIHK+GGW+DNDGSIFLACDTILNVLLKKELAGLLCGESSF+HLLEAIA
Subjt:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA

Query:  NST
        NST
Subjt:  NST
TrEMBL top hitse value%identityAlignment
A0A1S3BW48 neurochondrin isoform X14.2e-4791.26Show/hide
Query:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA
        MLS+EGEDEQSPFNS+CFLLPMLCQITMNVEGCKTLVSSGGLAAVV CL++LIHK+G WIDNDGSIFLACDTILNVLLKKEL GLLCGESSFIHLLEAI 
Subjt:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA

Query:  NST
        NST
Subjt:  NST
A0A6J1F631 uncharacterized protein LOC111442684 isoform X25.9e-4992.23Show/hide
Query:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA
        MLS+EGEDEQSPFNS+CFLLPMLCQITMNVEGCKTLVSSGGLAAVV+CL++LIHK+GGW+DNDGSIFLACDTILNVLLKKELAGLLCGESSF+HLLEAIA
Subjt:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA

Query:  NST
        NST
Subjt:  NST
A0A6J1FC19 uncharacterized protein LOC111442684 isoform X15.9e-4992.23Show/hide
Query:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA
        MLS+EGEDEQSPFNS+CFLLPMLCQITMNVEGCKTLVSSGGLAAVV+CL++LIHK+GGW+DNDGSIFLACDTILNVLLKKELAGLLCGESSF+HLLEAIA
Subjt:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA

Query:  NST
        NST
Subjt:  NST
A0A6J1IL84 neurochondrin homolog isoform X15.9e-4992.23Show/hide
Query:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA
        MLS+EGEDEQSPFNS+CFLLPMLCQITMNVEGCKTLVSSGGLAAVV+CL++LIHK+GGW+DNDGSIFLACDTILNVLLKKELAGLLCGESSF+HLLEAIA
Subjt:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA

Query:  NST
        NST
Subjt:  NST
A0A6J1IMN8 neurochondrin homolog isoform X25.9e-4992.23Show/hide
Query:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA
        MLS+EGEDEQSPFNS+CFLLPMLCQITMNVEGCKTLVSSGGLAAVV+CL++LIHK+GGW+DNDGSIFLACDTILNVLLKKELAGLLCGESSF+HLLEAIA
Subjt:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA

Query:  NST
        NST
Subjt:  NST
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G32050.1 neurochondrin family protein1.8e-2661Show/hide
Query:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA
        MLS++GEDE SPF S CFLLPMLCQITMN EGCK L  S G  AVV+CL+ LI + G  +D D SIFLACDTI+N+LLK+E        S+F  LL+A+A
Subjt:  MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTCTATTGAAGGTGAAGATGAACAGAGCCCATTCAACTCTATATGCTTCTTGCTTCCAATGCTATGTCAAATAACAATGAACGTTGAAGGATGTAAAACTTTGGT
TTCTTCTGGAGGTCTTGCAGCTGTTGTGCAATGCCTTGTAGATTTGATTCACAAGAACGGTGGCTGGATTGACAATGATGGATCCATCTTCTTGGCTTGTGATACAATCT
TGAATGTGCTTCTAAAGAAAGAGCTTGCTGGACTTCTATGTGGCGAATCGTCTTTTATTCACCTGTTGGAAGCAATTGCAAATTCGACTGTGCCTTTATGTGCATTGGCA
GAGGTTAGAAACTTTAATAATGTGGGTTATGCCGACTCTTTTCGAGAATCTTCGCTTTGTCTCAACAGGATGATGAAATGGCACAGATGGATCTTCTCGAGATTGTCACT
GCAGGATATTCTCGATGGGGAGATAGATTCCCTGGTGTTCAAAAGGCAATTGGCAGTTTCCGGTATTCATGAACGTTGCATCAACCCATCCGGCATCACGATCTTTCCTC
CAAAGTTTACTCCTATCAGCCTAAGCGAATACTTCAGAAGTCCAAAAACTAGCTTCCGATTAAACAGTGGATCTACAACATACGGTCTCAATTATTTTCATCGTAAATAT
ATTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTCTATTGAAGGTGAAGATGAACAGAGCCCATTCAACTCTATATGCTTCTTGCTTCCAATGCTATGTCAAATAACAATGAACGTTGAAGGATGTAAAACTTTGGT
TTCTTCTGGAGGTCTTGCAGCTGTTGTGCAATGCCTTGTAGATTTGATTCACAAGAACGGTGGCTGGATTGACAATGATGGATCCATCTTCTTGGCTTGTGATACAATCT
TGAATGTGCTTCTAAAGAAAGAGCTTGCTGGACTTCTATGTGGCGAATCGTCTTTTATTCACCTGTTGGAAGCAATTGCAAATTCGACTGTGCCTTTATGTGCATTGGCA
GAGGTTAGAAACTTTAATAATGTGGGTTATGCCGACTCTTTTCGAGAATCTTCGCTTTGTCTCAACAGGATGATGAAATGGCACAGATGGATCTTCTCGAGATTGTCACT
GCAGGATATTCTCGATGGGGAGATAGATTCCCTGGTGTTCAAAAGGCAATTGGCAGTTTCCGGTATTCATGAACGTTGCATCAACCCATCCGGCATCACGATCTTTCCTC
CAAAGTTTACTCCTATCAGCCTAAGCGAATACTTCAGAAGTCCAAAAACTAGCTTCCGATTAAACAGTGGATCTACAACATACGGTCTCAATTATTTTCATCGTAAATAT
ATTCCATAA
Protein sequenceShow/hide protein sequence
MLSIEGEDEQSPFNSICFLLPMLCQITMNVEGCKTLVSSGGLAAVVQCLVDLIHKNGGWIDNDGSIFLACDTILNVLLKKELAGLLCGESSFIHLLEAIANSTVPLCALA
EVRNFNNVGYADSFRESSLCLNRMMKWHRWIFSRLSLQDILDGEIDSLVFKRQLAVSGIHERCINPSGITIFPPKFTPISLSEYFRSPKTSFRLNSGSTTYGLNYFHRKY
IP