; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G18550 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G18550
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTetratricopeptide repeat protein like
Genome locationClcChr05:27595273..27598376
RNA-Seq ExpressionClc05G18550
SyntenyClc05G18550
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040940.1 uncharacterized protein E6C27_scaffold125G001350 [Cucumis melo var. makuwa]1.0e-1086.84Show/hide
Query:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        TSISFDIPDHVPNLC+ECEKP  HCGVGLRCI  VLEC
Subjt:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
XP_008461870.1 PREDICTED: uncharacterized protein LOC103500362 [Cucumis melo]1.0e-1086.84Show/hide
Query:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        TSISFDIPDHVPNLC+ECEKP  HCGVGLRCI  VLEC
Subjt:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
XP_022152889.1 uncharacterized protein LOC111020512 [Momordica charantia]5.1e-1084.21Show/hide
Query:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        T+ISFDIPDHVPNLCNEC KP  HCGVGLRCI  VLEC
Subjt:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
XP_031736033.1 uncharacterized protein LOC101222629 isoform X1 [Cucumis sativus]1.5e-0981.58Show/hide
Query:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        TSISFDIPDHVPN C+ECEKP  HCGVGLRCI  VL+C
Subjt:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
XP_038893879.1 uncharacterized protein LOC120082681 [Benincasa hispida]6.0e-1186.84Show/hide
Query:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        TSISFDIPDHVPNLCNEC+KP  HCGVGLRCI  VLEC
Subjt:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
TrEMBL top hitse value%identityAlignment
A0A059AAA3 Uncharacterized protein1.0e-0849.3Show/hide
Query:  NFSDSRSKFDGGVAEGFTETPQIFTSEIDTNWETSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        N S SR  +        TE+      E+ T     ISFDIPDHVPNLCNECE+P+ +CGVGL+CI    EC
Subjt:  NFSDSRSKFDGGVAEGFTETPQIFTSEIDTNWETSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
A0A1S3CG71 uncharacterized protein LOC1035003624.9e-1186.84Show/hide
Query:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        TSISFDIPDHVPNLC+ECEKP  HCGVGLRCI  VLEC
Subjt:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
A0A2R6Q798 Tetratricopeptide repeat protein like2.1e-0973.68Show/hide
Query:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        T ISFD+PDHVPN+CNECEKPH +CG+GLRCI    EC
Subjt:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
A0A5A7TC69 Uncharacterized protein4.9e-1186.84Show/hide
Query:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        TSISFDIPDHVPNLC+ECEKP  HCGVGLRCI  VLEC
Subjt:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
A0A6J1DHE8 uncharacterized protein LOC1110205122.5e-1084.21Show/hide
Query:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        T+ISFDIPDHVPNLCNEC KP  HCGVGLRCI  VLEC
Subjt:  TSISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G44716.1 unknown protein2.3e-0544.44Show/hide
Query:  ISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        +S ++  H+P+LC  CE+P  +CGV LRC+    EC
Subjt:  ISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
AT3G44716.2 unknown protein2.3e-0544.44Show/hide
Query:  ISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC
        +S ++  H+P+LC  CE+P  +CGV LRC+    EC
Subjt:  ISFDIPDHVPNLCNECEKPHRHCGVGLRCIYRVLEC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTGGCAGATCGATCGGACGACGGCGGCGAACAGAAGAAGACGGCAGAACGCTCGGACAGGTTTGCACAGCAGCTGCAGCGGGATCACAGCGAACACATGGACAGC
AGCGATGGTGGAGATTTGGACGGCGGCGATGCGTTTTGTCGACATGGATAACAACTTCTCGGACAGCAGAAGTAAATTCGATGGAGGTGTAGCAGAAGGGTTTACAGAAA
CTCCTCAGATTTTTACTTCAGAAATCGATACAAATTGGGAAACTTCAATCTCCTTTGACATTCCTGATCATGTTCCTAATTTGTGTAATGAGTGTGAGAAGCCTCATAGG
CATTGTGGAGTGGGTTTGAGATGCATATACCGTGTTCTTGAGTGTAGTTTGTTTCTAACAATTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTGGCAGATCGATCGGACGACGGCGGCGAACAGAAGAAGACGGCAGAACGCTCGGACAGGTTTGCACAGCAGCTGCAGCGGGATCACAGCGAACACATGGACAGC
AGCGATGGTGGAGATTTGGACGGCGGCGATGCGTTTTGTCGACATGGATAACAACTTCTCGGACAGCAGAAGTAAATTCGATGGAGGTGTAGCAGAAGGGTTTACAGAAA
CTCCTCAGATTTTTACTTCAGAAATCGATACAAATTGGGAAACTTCAATCTCCTTTGACATTCCTGATCATGTTCCTAATTTGTGTAATGAGTGTGAGAAGCCTCATAGG
CATTGTGGAGTGGGTTTGAGATGCATATACCGTGTTCTTGAGTGTAGTTTGTTTCTAACAATTGCATAA
Protein sequenceShow/hide protein sequence
MKWQIDRTTAANRRRRQNARTGLHSSCSGITANTWTAAMVEIWTAAMRFVDMDNNFSDSRSKFDGGVAEGFTETPQIFTSEIDTNWETSISFDIPDHVPNLCNECEKPHR
HCGVGLRCIYRVLECSLFLTIA