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Clc05G19090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G19090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLeucine-rich repeat extensin-like protein 4
Genome locationClcChr05:28030257..28031409
RNA-Seq ExpressionClc05G19090
SyntenyClc05G19090
Gene Ontology termsNA
InterPro domainsIPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024484.1 Leucine-rich repeat extensin-like protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]7.4e-1041.45Show/hide
Query:  TFLTLVCLIIAQKLSSINNAGV----LSTCTASLEASHYLKQAIHNCQFAPKLLKSYTYLILPLSQRSSMETLLDIFLNYYTFYLIPPYSTISNQFYNQG
        T L    +  AQKLS IN A +    LSTC  SLE SHYLK A HNCQ     L    Y++L           +D+     T YL      +S+  ++  
Subjt:  TFLTLVCLIIAQKLSSINNAGV----LSTCTASLEASHYLKQAIHNCQFAPKLLKSYTYLILPLSQRSSMETLLDIFLNYYTFYLIPPYSTISNQFYNQG

Query:  LSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIVCELS
          S      +F   S NN FAGKFPR   NFP HKYLGLQFN+FE  V  L+
Subjt:  LSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIVCELS

KDO59306.1 hypothetical protein CISIN_1g007628mg [Citrus sinensis]7.1e-0550Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F     S+F++L LL+ +   NNRF GKFP++F + P+ KYL L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

XP_006473926.1 leucine-rich repeat extensin-like protein 2 [Citrus sinensis]7.1e-0550Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F     S+F++L LL+ +   NNRF GKFP++F + P+ KYL L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

XP_021601811.1 leucine-rich repeat extensin-like protein 2 [Manihot esculenta]4.2e-0555.36Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F     +SF+KL LLF L   NNRF GKFP+V  + P  KYL L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

XP_030946226.1 LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 3 [Quercus lobata]5.5e-0557.14Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F +    SF+KL LLF L   NNRFAGKFP V    P  KYL L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

TrEMBL top hitse value%identityAlignment
A0A067F803 Uncharacterized protein3.5e-0550Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F     S+F++L LL+ +   NNRF GKFP++F + P+ KYL L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

A0A2C9U3Q3 Uncharacterized protein2.0e-0555.36Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F     +SF+KL LLF L   NNRF GKFP+V  + P  KYL L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

A0A6P5RVR3 leucine-rich repeat extensin-like protein 4 isoform X14.5e-0553.57Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F       F++L LLF L   NNRFAGKFPRV    P+ K+L L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

A0A7N2REW5 LRRNT_2 domain-containing protein2.6e-0557.14Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F +    SF+KL LLF L   NNRFAGKFP V    P  KYL L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

G7L8Y9 LRR extensin-like protein4.5e-0553.57Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F      +FQKL LLF L   NNRFAGKFP+V  + P  K+L ++FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

SwissProt top hitse value%identityAlignment
O65375 Leucine-rich repeat extensin-like protein 11.1e-0544.44Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEG
        SN+F  +   +F ++ LL+ L   NNRF GKFP+V  + P  K+L L++N+FEG
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEG

Q4PSE6 Leucine-rich repeat extensin-like protein 71.0e-0651.85Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEG
        SN+F       F +L+LLF L   NNRFAGKFP V    P+ KYL L++N+FEG
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEG

Q9SN46 Leucine-rich repeat extensin-like protein 52.6e-0550Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F       F +L LLF L   NNRFAG FP V    P  K+L L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

Q9T0K5 Leucine-rich repeat extensin-like protein 31.8e-0651.79Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F       F +L LLF L   NNRFAGKFP V    P  K+L L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

Arabidopsis top hitse value%identityAlignment
AT1G12040.1 leucine-rich repeat/extensin 18.1e-0744.44Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEG
        SN+F  +   +F ++ LL+ L   NNRF GKFP+V  + P  K+L L++N+FEG
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEG

AT4G13340.1 Leucine-rich repeat (LRR) family protein1.3e-0751.79Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F       F +L LLF L   NNRFAGKFP V    P  K+L L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

AT4G18670.1 Leucine-rich repeat (LRR) family protein1.8e-0650Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV
        SN+F       F +L LLF L   NNRFAG FP V    P  K+L L+FN+FEG V
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIV

AT4G28380.1 Leucine-rich repeat (LRR) family protein1.2e-0548.15Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEG
        SN+F      SF  L+LL+ L   NNRF G FP V    P  KYL L++N+FEG
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEG

AT5G25550.1 Leucine-rich repeat (LRR) family protein7.4e-0851.85Show/hide
Query:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEG
        SN+F       F +L+LLF L   NNRFAGKFP V    P+ KYL L++N+FEG
Subjt:  SNQFYNQGLSSFQKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCTTCTTTTTACCATTTCATTACCACCTTTCTCACGCTCGTTTGCCTTATCATAGCTCAAAAATTATCCTCCATAAACAATGCAGGCGTGCTGAGTACTTGCAC
TGCAAGTTTGGAAGCAAGCCATTATCTCAAACAAGCTATACATAACTGCCAATTTGCTCCAAAGCTCTTGAAGAGCTACACCTATCTTATACTGCCATTATCTCAAAGAA
GCTCAATGGAAACATTGCTGGACATCTTCCTGAATTACTACACCTTCTATCTGATACCGCCATATTCCACAATTTCAAATCAGTTTTACAATCAAGGTCTAAGCAGCTTC
CAAAAACTTACGCTCCTCTTCAGCTTAAAATCAGTTAACAACCGGTTTGCAGGAAAATTTCCTCGTGTTTTTCATAATTTTCCACGTCATAAATATCTTGGTCTTCAGTT
CAATAAGTTTGAAGGGATTGTTTGTGAGCTAAGCCAAAGCAGCATCTATTCAGGCCTGTTGATTAGAATTTCTTGTAAATCGCTTGCAGCCTCTTTTCCTTCAGTTTGTG
AGCTTACCACCTGTTGCAAGCAGTTGTCGGAATGTCACATACATATCTCTGCCATCACATCAATTCTACCATTAACTCGATCAAAGTATCTTGTTTTTATTTCCTCGCAA
GACTTTCCAGCTTTCAGGATCCATAACACCACCATGGGCGTAGGAATGTCGCCCATGTGTTATCCCACCTGTTGGACTGCATTATTCCAGTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTCTTCTTTTTACCATTTCATTACCACCTTTCTCACGCTCGTTTGCCTTATCATAGCTCAAAAATTATCCTCCATAAACAATGCAGGCGTGCTGAGTACTTGCAC
TGCAAGTTTGGAAGCAAGCCATTATCTCAAACAAGCTATACATAACTGCCAATTTGCTCCAAAGCTCTTGAAGAGCTACACCTATCTTATACTGCCATTATCTCAAAGAA
GCTCAATGGAAACATTGCTGGACATCTTCCTGAATTACTACACCTTCTATCTGATACCGCCATATTCCACAATTTCAAATCAGTTTTACAATCAAGGTCTAAGCAGCTTC
CAAAAACTTACGCTCCTCTTCAGCTTAAAATCAGTTAACAACCGGTTTGCAGGAAAATTTCCTCGTGTTTTTCATAATTTTCCACGTCATAAATATCTTGGTCTTCAGTT
CAATAAGTTTGAAGGGATTGTTTGTGAGCTAAGCCAAAGCAGCATCTATTCAGGCCTGTTGATTAGAATTTCTTGTAAATCGCTTGCAGCCTCTTTTCCTTCAGTTTGTG
AGCTTACCACCTGTTGCAAGCAGTTGTCGGAATGTCACATACATATCTCTGCCATCACATCAATTCTACCATTAACTCGATCAAAGTATCTTGTTTTTATTTCCTCGCAA
GACTTTCCAGCTTTCAGGATCCATAACACCACCATGGGCGTAGGAATGTCGCCCATGTGTTATCCCACCTGTTGGACTGCATTATTCCAGTATTAA
Protein sequenceShow/hide protein sequence
MNSSFYHFITTFLTLVCLIIAQKLSSINNAGVLSTCTASLEASHYLKQAIHNCQFAPKLLKSYTYLILPLSQRSSMETLLDIFLNYYTFYLIPPYSTISNQFYNQGLSSF
QKLTLLFSLKSVNNRFAGKFPRVFHNFPRHKYLGLQFNKFEGIVCELSQSSIYSGLLIRISCKSLAASFPSVCELTTCCKQLSECHIHISAITSILPLTRSKYLVFISSQ
DFPAFRIHNTTMGVGMSPMCYPTCWTALFQY