; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G19330 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G19330
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionreplication protein A 32 kDa subunit A-like
Genome locationClcChr05:28262629..28268428
RNA-Seq ExpressionClc05G19330
SyntenyClc05G19330
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006260 - DNA replication (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0000781 - chromosome, telomeric region (cellular component)
GO:0005662 - DNA replication factor A complex (cellular component)
GO:0035861 - site of double-strand break (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR014646 - Replication factor A protein 2
IPR014892 - Replication protein A, C-terminal
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024504.1 Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma]1.5e-13389.67Show/hide
Query:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF
        MFSS+QFDS SGFTSSQ+ +SS+ K+RE+PGLVP TVKQISEASHSGEEKANF INGVDITNVT+VGKVSEKAERNTDITF +DDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ
        DTKQM+EIQDGMY+RVNGHLKIFQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNLNG GSTQFQSSDS +KTP+QNGSSGY TASS +PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

XP_004136317.1 replication protein A 32 kDa subunit A [Cucumis sativus]1.6e-13591.51Show/hide
Query:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF
        MFSSTQFDSASGFTSSQ+N+SS+ KSRESPGL+PVTVKQISEASHSGEEKANFVINGVDITNVT+VGKVSEKAERNTDITFT+DDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ
        DT QMEEIQDGMYVRVNGHLK+FQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNL G GSTQ Q+SDS +KTPVQNGS+GY T SS IPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CDELVLDYLQLPSSVAKERGIH+DELSQQLK+PMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

XP_008466326.1 PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis melo]7.2e-13692.25Show/hide
Query:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF
        MFSSTQFDS SGFTSSQ+N+SS+ KSRESPGLVPVTVKQISEASHSGEEKANFVIN VDITNVT+VGKVSEKAERNTDITFT+DDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ
        DTKQMEEIQDGMYVRVNGHLK+FQSNKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQNL G+GSTQ Q+SDS +KTPVQNGSSGY T SS IPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

XP_022936562.1 replication protein A 32 kDa subunit A-like [Cucurbita moschata]6.1e-13590.41Show/hide
Query:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF
        MFSS+QFDS SGFTSSQ+N+SS+ K+RE+PGLVP TVKQISEASHSGEEKANFVINGVDITNVT+VGKVSEKAERNTDITF +DDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ
        DTKQM+EIQDGMY+RVNGHLKIFQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNLNG GSTQFQSSDS +KTP+QNGSSGY TASS +PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

XP_038897330.1 replication protein A 32 kDa subunit A-like [Benincasa hispida]1.4e-13994.46Show/hide
Query:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF
        MFS TQFDSASGFTSSQ+N+SS+ KSRESPGLVPVTVKQISEASHSGEEKANFV+NGVDITNV +VGKVSEKAERNTDITFT+DDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ
        DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNG+G TQFQSSDS +KTPVQNGSSG+ TASSGIPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

TrEMBL top hitse value%identityAlignment
A0A0A0LEG7 Uncharacterized protein7.8e-13691.51Show/hide
Query:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF
        MFSSTQFDSASGFTSSQ+N+SS+ KSRESPGL+PVTVKQISEASHSGEEKANFVINGVDITNVT+VGKVSEKAERNTDITFT+DDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ
        DT QMEEIQDGMYVRVNGHLK+FQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNL G GSTQ Q+SDS +KTPVQNGS+GY T SS IPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CDELVLDYLQLPSSVAKERGIH+DELSQQLK+PMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A1S3CR64 replication protein A 32 kDa subunit A-like3.5e-13692.25Show/hide
Query:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF
        MFSSTQFDS SGFTSSQ+N+SS+ KSRESPGLVPVTVKQISEASHSGEEKANFVIN VDITNVT+VGKVSEKAERNTDITFT+DDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ
        DTKQMEEIQDGMYVRVNGHLK+FQSNKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQNL G+GSTQ Q+SDS +KTPVQNGSSGY T SS IPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1CUB8 replication protein A 32 kDa subunit A4.9e-12285.61Show/hide
Query:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF
        MFSS+QFDS SGFTSSQ  +S++ KSRESPGLVPVTVKQISEA HSGEEKANFVINGVDITNVT+VGKVSEKAERNTDITF +DDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ
        DTKQM++IQDGMY+RVNGHLKIFQ N QIFAFSVRPVTN DEITFHFIECIHD+LRNSKLQ LNG  STQ QSSDST+   VQ+GSSGY TASS + S Q
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKN D+LVLDYLQLPSSVAKE+GIHRDELSQQLKIP+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1F8S8 replication protein A 32 kDa subunit A-like2.9e-13590.41Show/hide
Query:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF
        MFSS+QFDS SGFTSSQ+N+SS+ K+RE+PGLVP TVKQISEASHSGEEKANFVINGVDITNVT+VGKVSEKAERNTDITF +DDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ
        DTKQM+EIQDGMY+RVNGHLKIFQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNLNG GSTQFQSSDS +KTP+QNGSSGY TASS +PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1IMU1 replication protein A 32 kDa subunit A-like1.4e-13289.01Show/hide
Query:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF
        MFSS+QFDS SGFT SQ+N+SS+ K+RE+PGLVP TVKQISEASHSGEEKANF INGVDITNVT+VGKVSEKAERNTDITF +DDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTAS--SGIPS
        DTKQM+EIQDGMY+RVNGHLKIFQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNLNG GSTQFQSSDS +KTP+QNGSSGY TAS  S +PS
Subjt:  DTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTAS--SGIPS

Query:  EQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        EQHTVDVKKNCD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  EQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

SwissProt top hitse value%identityAlignment
Q5Z8L1 Replication protein A 32 kDa subunit C2.7e-2441.25Show/hide
Query:  SASGFTSSQSNESSTTKSRESPGLVPVTVKQISEA-----SHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTK
        SA+G  ++ +   S  +     G VP TV  IS +     +  G     F I+GV+ TNV V+G+V     R+TD+ FT+DD TG I   RW+ D  DT+
Subjt:  SASGFTSSQSNESSTTKSRESPGLVPVTVKQISEA-----SHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTK

Query:  QMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRN--SKLQ
            IQ+G+YV+V  +L  FQ+ KQ  A S+RP+ NF+E+  HFIEC+H HL +  SK+Q
Subjt:  QMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRN--SKLQ

Q6H7J5 Replication protein A 32 kDa subunit B4.3e-4337.14Show/hide
Query:  KSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQ
        KSR +  L+P+TVKQI +AS + ++K+NF +NG++++ V +VG++  K +R TD++FT+DDGTG +   RW ND+ DTK+M +IQ+G YV VNG LK FQ
Subjt:  KSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQ

Query:  SNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQHTVDVKKNCDELVLDYLQLPSSVA
          +Q+ A+SVR +TNF+++T HF+ C+H HL  ++ ++     +T   + + T+       +   +T  +   S         N  +LVL+    P+ + 
Subjt:  SNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQHTVDVKKNCDELVLDYLQLPSSVA

Query:  KERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKS
         + G+  D +S++L +P E +   I    D G +Y+TID+ H+KS
Subjt:  KERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKS

Q6K9U2 Replication protein A 32 kDa subunit A2.2e-4742.2Show/hide
Query:  FSSTQFDSASGFTSSQSNESSTT---KSRESPGLVPVTVKQISEASHS---GEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRW
        FS     S S FTSSQ+  + +T   KSR +   +P+TVKQISEA  S   GE+ A FV++GV+  NV +VG VS K ERNTD++FTIDDGTG +   RW
Subjt:  FSSTQFDSASGFTSSQSNESSTT---KSRESPGLVPVTVKQISEASHS---GEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRW

Query:  VNDTFDTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------NLNGEGSTQFQS-SDSTLKTPVQNGSSG
        VND  D+ +   +Q+GMYV V G LK  Q  K+  AF++RPVT+++E+T HFI+C+  HL N+K Q        +  GS+     S+ T  T V++  + 
Subjt:  VNDTFDTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------NLNGEGSTQFQS-SDSTLKTPVQNGSSG

Query:  YMTASSGIPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSA
         ++ ++G  ++ +T          VL+  + P++V  E G+H DE+ ++ ++P  KI  +I  L D G IYSTIDE H+KSA
Subjt:  YMTASSGIPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSA

Q8LFJ8 Replication protein A 32 kDa subunit B5.5e-4639.11Show/hide
Query:  SASGFTSSQS-----NESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTK
        +  GF  SQ+       SS+ K+R+   L+P+T+KQ+S AS +GE  +NF I+GVDI  V +VG++S    R T + F +DDGTG + C RW +   +T+
Subjt:  SASGFTSSQS-----NESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTK

Query:  QMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ
        +ME ++ GMYVR++GHLKIFQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+         + + Q   ST+ TP +   +G    S+  P++ 
Subjt:  QMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        +  D      + VL+YL  P  +  E G+H D ++++L+IP+ ++  ++  L ++G IYST+DE  FKS A
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

Q9ZQ19 Replication protein A 32 kDa subunit A4.0e-6548.04Show/hide
Query:  MFSSTQFD-----SASGFTSSQSNE-----SSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAE-RNTDITFTIDDGTGT
        MFSS+QF+     S  GF SSQ ++     SST K+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SASGFTSSQSNE-----SSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAE-RNTDITFTIDDGTGT

Query:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGY
        I CKRWV++TFD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q       TQ      ++ T  Q GS+  
Subjt:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGY

Query:  MTA--SSGIPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK
             +  + S+ +  + +KN D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  MTA--SSGIPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK

Arabidopsis top hitse value%identityAlignment
AT2G24490.1 replicon protein A22.9e-6648.04Show/hide
Query:  MFSSTQFD-----SASGFTSSQSNE-----SSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAE-RNTDITFTIDDGTGT
        MFSS+QF+     S  GF SSQ ++     SST K+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SASGFTSSQSNE-----SSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAE-RNTDITFTIDDGTGT

Query:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGY
        I CKRWV++TFD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q       TQ      ++ T  Q GS+  
Subjt:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGY

Query:  MTA--SSGIPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK
             +  + S+ +  + +KN D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  MTA--SSGIPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK

AT2G24490.2 replicon protein A22.9e-6648.04Show/hide
Query:  MFSSTQFD-----SASGFTSSQSNE-----SSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAE-RNTDITFTIDDGTGT
        MFSS+QF+     S  GF SSQ ++     SST K+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SASGFTSSQSNE-----SSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAE-RNTDITFTIDDGTGT

Query:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGY
        I CKRWV++TFD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q       TQ      ++ T  Q GS+  
Subjt:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGY

Query:  MTA--SSGIPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK
             +  + S+ +  + +KN D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  MTA--SSGIPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK

AT3G02920.1 Replication protein A, subunit RPA323.9e-4739.11Show/hide
Query:  SASGFTSSQS-----NESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTK
        +  GF  SQ+       SS+ K+R+   L+P+T+KQ+S AS +GE  +NF I+GVDI  V +VG++S    R T + F +DDGTG + C RW +   +T+
Subjt:  SASGFTSSQS-----NESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTK

Query:  QMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ
        +ME ++ GMYVR++GHLKIFQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+         + + Q   ST+ TP +   +G    S+  P++ 
Subjt:  QMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQ

Query:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        +  D      + VL+YL  P  +  E G+H D ++++L+IP+ ++  ++  L ++G IYST+DE  FKS A
Subjt:  HTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

AT3G02920.2 Replication protein A, subunit RPA321.9e-4639.23Show/hide
Query:  SSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYV
        S  S   S+ ++R+   L+P+T+KQ+S AS +GE  +NF I+GVDI  V +VG++S    R T + F +DDGTG + C RW +   +T++ME ++ GMYV
Subjt:  SSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYV

Query:  RVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQHTVDVKKNCDE
        R++GHLKIFQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+         + + Q   ST+ TP +   +G    S+  P++ +  D      +
Subjt:  RVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQHTVDVKKNCDE

Query:  LVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
         VL+YL  P  +  E G+H D ++++L+IP+ ++  ++  L ++G IYST+DE  FKS A
Subjt:  LVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCCAGTACCCAGTTTGATTCCGCCAGCGGATTTACGTCTTCTCAGTCCAATGAATCCTCTACAACGAAGAGTCGAGAATCGCCGGGCTTGGTTCCGGTAACCGT
GAAACAGATTAGCGAAGCTTCACATTCTGGCGAAGAGAAGGCCAACTTTGTAATCAACGGCGTTGACATTACAAATGTTACAGTCGTTGGGAAGGTATCAGAGAAAGCTG
AAAGGAATACGGACATCACATTCACTATAGATGATGGAACAGGAACAATTGGTTGCAAAAGATGGGTAAACGACACTTTTGACACCAAGCAAATGGAGGAAATACAAGAT
GGAATGTATGTACGGGTGAATGGGCATTTGAAAATATTTCAAAGTAACAAGCAAATTTTTGCATTCTCCGTAAGGCCTGTAACAAATTTTGATGAAATTACCTTCCACTT
TATTGAATGCATACACGACCACTTGCGGAATTCCAAGTTACAGAATCTCAATGGCGAAGGATCAACACAGTTCCAATCCTCAGATTCAACTCTGAAGACTCCAGTGCAGA
ATGGCTCGAGTGGATATATGACAGCATCTTCTGGAATACCATCTGAGCAGCACACTGTTGATGTTAAAAAGAACTGTGATGAATTGGTTCTCGACTATCTGCAGCTGCCC
TCCAGCGTTGCAAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATATTGAACTCCATAAGGTCTCTTGAAGATGAAGGTTT
GATATATTCCACCATAGATGAGTTTCACTTCAAGTCTGCCGCATAG
mRNA sequenceShow/hide mRNA sequence
ATTGAAACAGGGTCAGCCCATAAATTTGCATGGATAGAAGCGAGAGAGAGATTGGGCTCTGCAGCTCACAAGAACTGGCGGGAAATCTAGCATCAATGGCGGGAAAACGG
AAAGCTTCTACTTCATAAGTTCATATTTGCATCGCAAATTTTTTTTCATCTCTCAACTGTTGATTGTTCATCGAGTTATCACTCACAGGATTTGGAAGAATGTTCTCCAG
TACCCAGTTTGATTCCGCCAGCGGATTTACGTCTTCTCAGTCCAATGAATCCTCTACAACGAAGAGTCGAGAATCGCCGGGCTTGGTTCCGGTAACCGTGAAACAGATTA
GCGAAGCTTCACATTCTGGCGAAGAGAAGGCCAACTTTGTAATCAACGGCGTTGACATTACAAATGTTACAGTCGTTGGGAAGGTATCAGAGAAAGCTGAAAGGAATACG
GACATCACATTCACTATAGATGATGGAACAGGAACAATTGGTTGCAAAAGATGGGTAAACGACACTTTTGACACCAAGCAAATGGAGGAAATACAAGATGGAATGTATGT
ACGGGTGAATGGGCATTTGAAAATATTTCAAAGTAACAAGCAAATTTTTGCATTCTCCGTAAGGCCTGTAACAAATTTTGATGAAATTACCTTCCACTTTATTGAATGCA
TACACGACCACTTGCGGAATTCCAAGTTACAGAATCTCAATGGCGAAGGATCAACACAGTTCCAATCCTCAGATTCAACTCTGAAGACTCCAGTGCAGAATGGCTCGAGT
GGATATATGACAGCATCTTCTGGAATACCATCTGAGCAGCACACTGTTGATGTTAAAAAGAACTGTGATGAATTGGTTCTCGACTATCTGCAGCTGCCCTCCAGCGTTGC
AAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATATTGAACTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCA
CCATAGATGAGTTTCACTTCAAGTCTGCCGCATAGAATTTATCATAACTCTCTCTAATTTTATTTTTATTTTTATTTTTAATTTTTTTACTATGCTTTTAGATGTGGTTT
AGACAGACATATACTGTTTGCTTGAAACATATCTGTTTTCTGCCTTGTTCAATGTATATGTATTTGAAGCTTTTAGATTAAGCTTAAGCCTTTTCTTAGGGGTTAACAAA
AAATCATCAATCATATGGCAACCGATGCACCAATTTTAACTTTGGTGACGGTTGGCTTTGTTTTGTATAATGAAAAATCGGTGGTGTATAAGCATTTTGATTGGTCAATT
ATCAAAAGTTAAATGAATGTTAGAGATTCTAATTGTTTCATCAAATGAAAAGTTATCAGACTTCAAA
Protein sequenceShow/hide protein sequence
MFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTKQMEEIQD
GMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQHTVDVKKNCDELVLDYLQLP
SSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA