; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G19480 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G19480
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING-type domain-containing protein
Genome locationClcChr05:28398184..28399664
RNA-Seq ExpressionClc05G19480
SyntenyClc05G19480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136311.1 uncharacterized protein LOC101218753 [Cucumis sativus]2.2e-4646.84Show/hide
Query:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS
        MDGYSSKRVH+GIVSRKG GVVLRDNMKH DQSN+  NR GC GRICSSSGA+V C +K SSKRPF SS GKE  G    SSS I+NLR SFP  FGKLS
Subjt:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS

Query:  SKLETDSSENDSIHDELEELEFISPLGLLHT---------------------------------------------------------------------
        SKLETDSSENDSI D+LEELEFISP GL HT                                                                     
Subjt:  SKLETDSSENDSIHDELEELEFISPLGLLHT---------------------------------------------------------------------

Query:  ----FILEVFAKHQTVVPVGTIRETSHLIQYL-------NSRGKKASGTSQGQKCVYWHDISISDKQPG
             + EV   + +++    +R  + + +         +SRGKK SGTS+GQKC+Y H ISISD+ PG
Subjt:  ----FILEVFAKHQTVVPVGTIRETSHLIQYL-------NSRGKKASGTSQGQKCVYWHDISISDKQPG

XP_022940547.1 uncharacterized protein LOC111446115 [Cucurbita moschata]1.1e-4773.65Show/hide
Query:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS
        MD YSSKRVHMGIVSRKG GVVLRDN+K+ DQSN+Y NRLGCTGRIC++SG +V C NK+SSKRPFRSS GKEVVGSSS SSSAIRNLR SFP  F KLS
Subjt:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS

Query:  SKLETDSSENDSIHDELEELEFISPLGLLHTFILEVFAKHQTVVPVGT
        SKLETDSSENDSI D+LEELEFISP  L HT +     K ++ +P  T
Subjt:  SKLETDSSENDSIHDELEELEFISPLGLLHTFILEVFAKHQTVVPVGT

XP_022981972.1 uncharacterized protein LOC111480963 [Cucurbita maxima]1.0e-4849.44Show/hide
Query:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS
        MD Y+SKRVHMGIVSRKG GVVLRDN+K+ DQSN+Y NRLGCTGRIC++SG +V C NK+SSKRPFRSS GKEVVGSSS SSSAIRNLR SFP  F KLS
Subjt:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS

Query:  SKLETDSSENDSIHDELEELEFISPLGLLHT-------------------------------------FILEVFAKHQTVVP--------VGTIRETS--
        SKLETDSSENDSI D+LEELEFISP  L HT                                     F ++    H ++ P         G  R +S  
Subjt:  SKLETDSSENDSIHDELEELEFISPLGLLHT-------------------------------------FILEVFAKHQTVVP--------VGTIRETS--

Query:  -------------------HLIQYLN--------------SRGKKASGTSQGQKCVYWHDISISDKQPG
                           +L++  N              SRGKK  GTSQGQ CV  H I ISD++PG
Subjt:  -------------------HLIQYLN--------------SRGKKASGTSQGQKCVYWHDISISDKQPG

XP_023524149.1 uncharacterized protein LOC111788150 [Cucurbita pepo subsp. pepo]2.5e-4771.81Show/hide
Query:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS
        MD YSSKRVHMGIVSRKG GVVLRDN+K+ DQSN+Y NRLGCTGR+C++SG +V C NK+SSKRPFRSS GKEV+GSSS SSSAIRNLR SFP  F KLS
Subjt:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS

Query:  SKLETDSSENDSIHDELEELEFISPLGLLHTFILEVFAKHQTVVPVGTI
        SKLETDSSENDSI D+LEELEFISP  L HT +     K ++ +P  T+
Subjt:  SKLETDSSENDSIHDELEELEFISPLGLLHTFILEVFAKHQTVVPVGTI

XP_038898034.1 uncharacterized protein LOC120085870 [Benincasa hispida]6.2e-5452.26Show/hide
Query:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS
        MDGYSSKRV++GI+SRKG GVVLRDNMKH DQSNQY NR GCTGRICSSSG +V C NKSSSKRPFRSS GKEVVGSSS SSSAIRNLR S+P  FGK S
Subjt:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS

Query:  SKLETDSSENDSIHDELEELEFISPLGLLHT--------------FILEVFA-----------------------KHQTVVPV--------GTIRETS--
        SKLE DSS NDSIHDELEELEFISP GL HT               ++E+ +                        H ++ P         G+ R  S  
Subjt:  SKLETDSSENDSIHDELEELEFISPLGLLHT--------------FILEVFA-----------------------KHQTVVPV--------GTIRETS--

Query:  ----------------HLIQYLN--------------SRGKKASGTSQGQKCVYWHDISISDKQPG
                        +L++ +N              SRGKK SGTS+GQKC+Y H ISISD++PG
Subjt:  ----------------HLIQYLN--------------SRGKKASGTSQGQKCVYWHDISISDKQPG

TrEMBL top hitse value%identityAlignment
A0A0A0LJG2 RING-type domain-containing protein8.8e-5446.46Show/hide
Query:  STLKIFQLL--ICPLIGADWFMDYKEFLMDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGK
        S L++FQ +  +  ++  DWF+D KEFLMDGYSSKRVH+GIVSRKG GVVLRDNMKH DQSN+  NR GC GRICSSSGA+V C +K SSKRPF SS GK
Subjt:  STLKIFQLL--ICPLIGADWFMDYKEFLMDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGK

Query:  EVVGSSSSSSSAIRNLRNSFPWAFGKLSSKLETDSSENDSIHDELEELEFISPLGLLHT-----------------------------------------
        E  G    SSS I+NLR SFP  FGKLSSKLETDSSENDSI D+LEELEFISP GL HT                                         
Subjt:  EVVGSSSSSSSAIRNLRNSFPWAFGKLSSKLETDSSENDSIHDELEELEFISPLGLLHT-----------------------------------------

Query:  --------------------------------FILEVFAKHQTVVPVGTIRETSHLIQYL-------NSRGKKASGTSQGQKCVYWHDISISDKQPG
                                         + EV   + +++    +R  + + +         +SRGKK SGTS+GQKC+Y H ISISD+ PG
Subjt:  --------------------------------FILEVFAKHQTVVPVGTIRETSHLIQYL-------NSRGKKASGTSQGQKCVYWHDISISDKQPG

A0A1S4E5I3 uncharacterized protein LOC1035037552.3e-4647.21Show/hide
Query:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS
        MDGYSSKRVH+GIVSRKG GVVLRDNMK  DQSNQY NR GCTGRICSSSGA+V C +K SSKRPF SS GKE +G    SSS I+NLR SFP  FGKL 
Subjt:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS

Query:  SKLETDSSENDSIHDELEELEFISPLGLLHT---------------------------------------------------------------------
        SKLE DSSE+DSIHDELEELE ISP GL HT                                                                     
Subjt:  SKLETDSSENDSIHDELEELEFISPLGLLHT---------------------------------------------------------------------

Query:  ----FILEVFAKHQTVVPVGTIRETSHLIQY-------LNSRGKKASGTSQGQKCVYWHDISISDKQPG
             + EV   + +++    +R  +   +         +SRGKKASGTS+GQKC+Y H ISISD+ PG
Subjt:  ----FILEVFAKHQTVVPVGTIRETSHLIQY-------LNSRGKKASGTSQGQKCVYWHDISISDKQPG

A0A5D3E5H2 E3 ubiquitin-protein ligase MBR22.3e-4647.21Show/hide
Query:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS
        MDGYSSKRVH+GIVSRKG GVVLRDNMK  DQSNQY NR GCTGRICSSSGA+V C +K SSKRPF SS GKE +G    SSS I+NLR SFP  FGKL 
Subjt:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS

Query:  SKLETDSSENDSIHDELEELEFISPLGLLHT---------------------------------------------------------------------
        SKLE DSSE+DSIHDELEELE ISP GL HT                                                                     
Subjt:  SKLETDSSENDSIHDELEELEFISPLGLLHT---------------------------------------------------------------------

Query:  ----FILEVFAKHQTVVPVGTIRETSHLIQY-------LNSRGKKASGTSQGQKCVYWHDISISDKQPG
             + EV   + +++    +R  +   +         +SRGKKASGTS+GQKC+Y H ISISD+ PG
Subjt:  ----FILEVFAKHQTVVPVGTIRETSHLIQY-------LNSRGKKASGTSQGQKCVYWHDISISDKQPG

A0A6J1FKJ9 uncharacterized protein LOC1114461155.5e-4873.65Show/hide
Query:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS
        MD YSSKRVHMGIVSRKG GVVLRDN+K+ DQSN+Y NRLGCTGRIC++SG +V C NK+SSKRPFRSS GKEVVGSSS SSSAIRNLR SFP  F KLS
Subjt:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS

Query:  SKLETDSSENDSIHDELEELEFISPLGLLHTFILEVFAKHQTVVPVGT
        SKLETDSSENDSI D+LEELEFISP  L HT +     K ++ +P  T
Subjt:  SKLETDSSENDSIHDELEELEFISPLGLLHTFILEVFAKHQTVVPVGT

A0A6J1J3B4 uncharacterized protein LOC1114809635.0e-4949.44Show/hide
Query:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS
        MD Y+SKRVHMGIVSRKG GVVLRDN+K+ DQSN+Y NRLGCTGRIC++SG +V C NK+SSKRPFRSS GKEVVGSSS SSSAIRNLR SFP  F KLS
Subjt:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLS

Query:  SKLETDSSENDSIHDELEELEFISPLGLLHT-------------------------------------FILEVFAKHQTVVP--------VGTIRETS--
        SKLETDSSENDSI D+LEELEFISP  L HT                                     F ++    H ++ P         G  R +S  
Subjt:  SKLETDSSENDSIHDELEELEFISPLGLLHT-------------------------------------FILEVFAKHQTVVP--------VGTIRETS--

Query:  -------------------HLIQYLN--------------SRGKKASGTSQGQKCVYWHDISISDKQPG
                           +L++  N              SRGKK  GTSQGQ CV  H I ISD++PG
Subjt:  -------------------HLIQYLN--------------SRGKKASGTSQGQKCVYWHDISISDKQPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G24870.1 RING/U-box superfamily protein1.3e-0935.61Show/hide
Query:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYD--NRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSI-GKEVVGSSSSSSSAIRNLRNSFPWAFG
        MDG+  KR    I+ RK  G+VL +NMK  D  +     +R+GC+ R+ S+ G  +  +   ++   FRS + GKE VGSSS S S     + +     G
Subjt:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYD--NRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSI-GKEVVGSSSSSSSAIRNLRNSFPWAFG

Query:  K--LSSKLETDSSENDSIHDELEELEFISPLG
        +  LSS L+ DSSE+ S++++    E   P G
Subjt:  K--LSSKLETDSSENDSIHDELEELEFISPLG

AT5G24870.2 RING/U-box superfamily protein1.3e-0935.61Show/hide
Query:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYD--NRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSI-GKEVVGSSSSSSSAIRNLRNSFPWAFG
        MDG+  KR    I+ RK  G+VL +NMK  D  +     +R+GC+ R+ S+ G  +  +   ++   FRS + GKE VGSSS S S     + +     G
Subjt:  MDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYD--NRLGCTGRICSSSGAKVRCYNKSSSKRPFRSSI-GKEVVGSSSSSSSAIRNLRNSFPWAFG

Query:  K--LSSKLETDSSENDSIHDELEELEFISPLG
        +  LSS L+ DSSE+ S++++    E   P G
Subjt:  K--LSSKLETDSSENDSIHDELEELEFISPLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCTTCAAAACTGCATGACAAGTGATACTTACCCTGGATTTGATCGATTGTTTGGTTCAACGTTGAAGATATTCCAGCTCCTCATATGTCCCTTAATTGGTGCTGA
TTGGTTTATGGACTACAAAGAATTTCTGATGGATGGGTATTCCAGTAAACGAGTTCATATGGGAATTGTTTCTAGGAAGGGACTTGGTGTAGTTTTGAGGGATAACATGA
AGCACGGGGATCAAAGTAATCAATACGATAACCGACTTGGCTGCACTGGCAGGATATGCTCCAGTAGTGGTGCAAAAGTTCGCTGTTATAATAAATCCAGCTCAAAAAGA
CCATTCCGCAGCTCAATTGGTAAAGAAGTTGTGGGAAGTTCCTCAAGTAGTTCCTCTGCAATCAGAAATCTCAGGAATTCTTTTCCATGGGCTTTTGGAAAGCTATCATC
TAAGCTTGAAACAGATTCATCTGAAAATGATAGCATTCATGATGAGTTGGAAGAACTGGAATTCATCTCACCTCTTGGATTGCTCCATACGTTCATCCTAGAAGTCTTTG
CCAAACATCAAACAGTGGTTCCAGTTGGTACAATTCGAGAAACCTCACATTTGATTCAGTATCTAAATTCTAGAGGAAAGAAGGCGAGTGGAACCTCCCAAGGACAAAAG
TGTGTGTATTGGCATGACATTTCTATTTCTGATAAACAACCAGGATTTACTAGCAATGACTTCGGTGATGCCTCAGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTCTTCAAAACTGCATGACAAGTGATACTTACCCTGGATTTGATCGATTGTTTGGTTCAACGTTGAAGATATTCCAGCTCCTCATATGTCCCTTAATTGGTGCTGA
TTGGTTTATGGACTACAAAGAATTTCTGATGGATGGGTATTCCAGTAAACGAGTTCATATGGGAATTGTTTCTAGGAAGGGACTTGGTGTAGTTTTGAGGGATAACATGA
AGCACGGGGATCAAAGTAATCAATACGATAACCGACTTGGCTGCACTGGCAGGATATGCTCCAGTAGTGGTGCAAAAGTTCGCTGTTATAATAAATCCAGCTCAAAAAGA
CCATTCCGCAGCTCAATTGGTAAAGAAGTTGTGGGAAGTTCCTCAAGTAGTTCCTCTGCAATCAGAAATCTCAGGAATTCTTTTCCATGGGCTTTTGGAAAGCTATCATC
TAAGCTTGAAACAGATTCATCTGAAAATGATAGCATTCATGATGAGTTGGAAGAACTGGAATTCATCTCACCTCTTGGATTGCTCCATACGTTCATCCTAGAAGTCTTTG
CCAAACATCAAACAGTGGTTCCAGTTGGTACAATTCGAGAAACCTCACATTTGATTCAGTATCTAAATTCTAGAGGAAAGAAGGCGAGTGGAACCTCCCAAGGACAAAAG
TGTGTGTATTGGCATGACATTTCTATTTCTGATAAACAACCAGGATTTACTAGCAATGACTTCGGTGATGCCTCAGTCTAG
Protein sequenceShow/hide protein sequence
MLLQNCMTSDTYPGFDRLFGSTLKIFQLLICPLIGADWFMDYKEFLMDGYSSKRVHMGIVSRKGLGVVLRDNMKHGDQSNQYDNRLGCTGRICSSSGAKVRCYNKSSSKR
PFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKLETDSSENDSIHDELEELEFISPLGLLHTFILEVFAKHQTVVPVGTIRETSHLIQYLNSRGKKASGTSQGQK
CVYWHDISISDKQPGFTSNDFGDASV