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Clc05G19570 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G19570
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCytochrome c oxidase subunit 1
Genome locationClcChr05:28511025..28514309
RNA-Seq ExpressionClc05G19570
SyntenyClc05G19570
Gene Ontology termsGO:0006119 - oxidative phosphorylation (biological process)
GO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0022900 - electron transport chain (biological process)
GO:1902600 - proton transmembrane transport (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0070469 - respirasome (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004129 - cytochrome-c oxidase activity (molecular function)
GO:0020037 - heme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AGC78890.1 hypothetical protein [Vicia faba]4.4e-1782.76Show/hide
Query:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTGFSSTSLDSLF
        MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPV +WGT  S     S F
Subjt:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTGFSSTSLDSLF
CAB4073109.1 unnamed protein product [Lactuca saligna]3.4e-1795.74Show/hide
Query:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGT
        MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPV +WGT
Subjt:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGT
CDY45505.1 BnaCnng12640D [Brassica napus]4.4e-1782.76Show/hide
Query:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTGFSSTSLDSLF
        MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPV +WGT  S     S F
Subjt:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTGFSSTSLDSLF
PWA63876.1 reverse transcriptase zinc-binding domain-containing protein [Artemisia annua]5.3e-1888.89Show/hide
Query:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTGFSSTSL
        MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPV +WGTG +  SL
Subjt:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTGFSSTSL
TKS02677.1 hypothetical protein D5086_0000160780 [Populus alba]6.9e-1895.83Show/hide
Query:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTG
        MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPV +WGTG
Subjt:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTG
TrEMBL top hitse value%identityAlignment
A0A2U1MRM1 Cytochrome c oxidase subunit 12.5e-1888.89Show/hide
Query:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTGFSSTSL
        MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPV +WGTG +  SL
Subjt:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTGFSSTSL
A0A385FBI6 Uncharacterized protein2.2e-1782.76Show/hide
Query:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTGFSSTSLDSLF
        MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPV +WGT  S     S F
Subjt:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTGFSSTSLDSLF
A0A4U5Q298 Uncharacterized protein3.3e-1895.83Show/hide
Query:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTG
        MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPV +WGTG
Subjt:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTG
A0A6N2KN62 Uncharacterized protein (Fragment)7.4e-1893.75Show/hide
Query:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTG
        MCRFPNQKIGEHPFSRSYGVILPSSFDMVLS+ALVYSTCSPV +WGTG
Subjt:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTG
A0A6S7KR95 Uncharacterized protein1.6e-1795.74Show/hide
Query:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGT
        MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPV +WGT
Subjt:  MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTC
TACTTGTTCACCTGTGTGGATTTGGGGTACGGGGTTTTCTTCAACCTCCTTAGATTCTCTTTTCATTTTCAGAGCTAACGAAAGAATCATCAACTCATCTGGAAGAATGG
CGCTGCGTTCTGGTTGTCTGTATTCTGAAATTGGGTCTCAAATGTGGAGGCATAATCGAGCAGTTGAATGGACAGATTTAGGTTTTGTTGGTTTTTGTTGTGAAAGACAG
TTTTCTGTTAGCAATGAGGGATCCAAACACTTGAGGGAGCCCCAGAATGAAAGCAAGAGATTAGCTTTTATTGGTAATTGGGAAACACAGAACAGTCTCGACGCTTCCAT
TTCAATTCAAGCATATAGGGGCACTAGAGTTTGCTCCAATCTGCAAGGCAAAGCAAAATATGAAAAGCCTTTTGATAGTATGCAAATTGGGATTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTC
TACTTGTTCACCTGTGTGGATTTGGGGTACGGGGTTTTCTTCAACCTCCTTAGATTCTCTTTTCATTTTCAGAGCTAACGAAAGAATCATCAACTCATCTGGAAGAATGG
CGCTGCGTTCTGGTTGTCTGTATTCTGAAATTGGGTCTCAAATGTGGAGGCATAATCGAGCAGTTGAATGGACAGATTTAGGTTTTGTTGGTTTTTGTTGTGAAAGACAG
TTTTCTGTTAGCAATGAGGGATCCAAACACTTGAGGGAGCCCCAGAATGAAAGCAAGAGATTAGCTTTTATTGGTAATTGGGAAACACAGAACAGTCTCGACGCTTCCAT
TTCAATTCAAGCATATAGGGGCACTAGAGTTTGCTCCAATCTGCAAGGCAAAGCAAAATATGAAAAGCCTTTTGATAGTATGCAAATTGGGATTGCTTGA
Protein sequenceShow/hide protein sequence
MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVWIWGTGFSSTSLDSLFIFRANERIINSSGRMALRSGCLYSEIGSQMWRHNRAVEWTDLGFVGFCCERQ
FSVSNEGSKHLREPQNESKRLAFIGNWETQNSLDASISIQAYRGTRVCSNLQGKAKYEKPFDSMQIGIA