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Clc05G19940 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G19940
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionleucine-rich repeat extensin-like protein 2
Genome locationClcChr05:28810180..28813087
RNA-Seq ExpressionClc05G19940
SyntenyClc05G19940
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649911.1 hypothetical protein Csa_012510 [Cucumis sativus]1.1e-6786.54Show/hide
Query:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSYI-PPPPNFDGAY-MAPPATPSYSFWGPPPPVANYFLGAQP
        MPF G RRILGS GLWIVA  LFSASS+AQM+VPSTGQLCISDCSTCPVICTAPPPP SYI PPPPNF G + MAPPATPSY  WGPPPPVANYFLGA+P
Subjt:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSYI-PPPPNFDGAY-MAPPATPSYSFWGPPPPVANYFLGAQP

Query:  SGEMPQTVGPRDYSYPYYYFYSSNSVVQKIEVISDPNGKTITGFVNKRRRSSSARR
        SGEMPQTVGPRDYSYPYYYFYSSNSVVQK EVISDPNGKTITGFVN++ RSSSA R
Subjt:  SGEMPQTVGPRDYSYPYYYFYSSNSVVQKIEVISDPNGKTITGFVNKRRRSSSARR

KAG6608366.1 Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia]2.3e-3667.97Show/hide
Query:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFDGAYMAPP--ATPSYSFWGPPPPVANYFL
        MPF G      SLGLW++A ALF   S+AQ+ VPSTGQLCIS C TCPV+CT  P PRSY     PPPP F G YM PP   T SY   GPPPPVANY  
Subjt:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFDGAYMAPP--ATPSYSFWGPPPPVANYFL

Query:  GAQPSGEMPQTVGPRDYSYPYYYFYSSN
        GAQPSG+MPQTVGPRDYSYPYYYFYSSN
Subjt:  GAQPSGEMPQTVGPRDYSYPYYYFYSSN

XP_022940707.1 leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]3.0e-3667.97Show/hide
Query:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFDGAYMAPP--ATPSYSFWGPPPPVANYFL
        MPF G  R   SLGLW++A ALF   S+AQ+ VPSTGQLCIS C TCPV+CT  P PRSY     PPPP F G YM PP   T SY   GP PPVANY  
Subjt:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFDGAYMAPP--ATPSYSFWGPPPPVANYFL

Query:  GAQPSGEMPQTVGPRDYSYPYYYFYSSN
        GAQPSG+MPQTVGPRDYSYPYYYFYSSN
Subjt:  GAQPSGEMPQTVGPRDYSYPYYYFYSSN

XP_022981722.1 leucine-rich repeat extensin-like protein 1 [Cucurbita maxima]1.5e-3565.67Show/hide
Query:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAP---PPPRSYI-------PPPPNFDGAYMAPP--ATPSYSFWGPPPP
        MPF G  R   SLGL ++A ALF   S+AQ+ VPST QLCIS C TCPV+CT P   P PRSY        PPPP F G YM PP   T SY F GPPPP
Subjt:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAP---PPPRSYI-------PPPPNFDGAYMAPP--ATPSYSFWGPPPP

Query:  VANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSN
        VANY  GAQPSG+MPQTVGPRDYSYPYYYFYSSN
Subjt:  VANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSN

XP_023523402.1 leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo]2.9e-3169.03Show/hide
Query:  VALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSY------IPPPPNFDGAYMAPP--ATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPR
        +A ALF   S+AQ+ VPSTGQLCIS C TCPV+CT  P PRSY       PPPP F G YM PP   T SY   GPPPPVANY  GAQPSG+MPQTVGPR
Subjt:  VALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSY------IPPPPNFDGAYMAPP--ATPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPR

Query:  DYSYPYYYFYSSN
        DYSYPYYYFYSSN
Subjt:  DYSYPYYYFYSSN

TrEMBL top hitse value%identityAlignment
A0A0A0L054 Microtubule associated protein (Ase1)1.2e-5787.02Show/hide
Query:  MCHTKTMPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSYI-PPPPNFDGAY-MAPPATPSYSFWGPPPPVANY
        MCH+KTMPF G RRILGS GLWIVA  LFSASS+AQM+VPSTGQLCISDCSTCPVICTAPPPP SYI PPPPNF G + MAPPATPSY  WGPPPPVANY
Subjt:  MCHTKTMPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSYI-PPPPNFDGAY-MAPPATPSYSFWGPPPPVANY

Query:  FLGAQPSGEMPQTVGPRDYSYPYYYFYSSNS
        FLGA+PSGEMPQTVGPRDYSYPYYYFYSSNS
Subjt:  FLGAQPSGEMPQTVGPRDYSYPYYYFYSSNS

A0A2N9HA71 Uncharacterized protein7.3e-2046.38Show/hide
Query:  LWIVA-LALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPP-----------------PPRSYI---PPPPNFDGAYMAPPATP----SYSFWGPPPPV
        +WI+  L L + +SE Q+  PS+G LCISDC+TCPVIC+ PP                 PP+SY    PPPP+   +   PPA+P    SYS WG PPP 
Subjt:  LWIVA-LALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPP-----------------PPRSYI---PPPPNFDGAYMAPPATP----SYSFWGPPPPV

Query:  ANYFLGAQPSG----EMPQTVGPRDYSYPYYYFYSSNS
          YF    PSG     MP   GP DY YPYYYFYSS +
Subjt:  ANYFLGAQPSG----EMPQTVGPRDYSYPYYYFYSSNS

A0A6A1VUN3 Uncharacterized protein5.8e-1740.82Show/hide
Query:  LGLWIVALALF--SASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPR--SYIPPPPNFDGAYMA--------------------------------PPA
        L +WI  L +F  + +SE Q+  PSTG LCISDC+TCPVIC+ PPPP    + PPPP     + +                                PP 
Subjt:  LGLWIVALALF--SASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPR--SYIPPPPNFDGAYMA--------------------------------PPA

Query:  TPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSNS
        + SYS  GPPP    YF    PSG+ P T GPRDY YPYYYF +S +
Subjt:  TPSYSFWGPPPPVANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSNS

A0A6J1FKD3 leucine-rich repeat extensin-like protein 21.5e-3667.97Show/hide
Query:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFDGAYMAPP--ATPSYSFWGPPPPVANYFL
        MPF G  R   SLGLW++A ALF   S+AQ+ VPSTGQLCIS C TCPV+CT  P PRSY     PPPP F G YM PP   T SY   GP PPVANY  
Subjt:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFDGAYMAPP--ATPSYSFWGPPPPVANYFL

Query:  GAQPSGEMPQTVGPRDYSYPYYYFYSSN
        GAQPSG+MPQTVGPRDYSYPYYYFYSSN
Subjt:  GAQPSGEMPQTVGPRDYSYPYYYFYSSN

A0A6J1IUS7 leucine-rich repeat extensin-like protein 17.3e-3665.67Show/hide
Query:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAP---PPPRSYI-------PPPPNFDGAYMAPP--ATPSYSFWGPPPP
        MPF G  R   SLGL ++A ALF   S+AQ+ VPST QLCIS C TCPV+CT P   P PRSY        PPPP F G YM PP   T SY F GPPPP
Subjt:  MPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAP---PPPRSYI-------PPPPNFDGAYMAPP--ATPSYSFWGPPPP

Query:  VANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSN
        VANY  GAQPSG+MPQTVGPRDYSYPYYYFYSSN
Subjt:  VANYFLGAQPSGEMPQTVGPRDYSYPYYYFYSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11990.1 proline-rich family protein5.0e-0529.87Show/hide
Query:  LGLWIVALALFSASSEAQMSVPSTG---QLCISDCSTCPVICTAP---------PPPRSYIP----PPPNFDGAYMAPPATPSYS------FWGPPPPVA
        +GL ++ +AL      A      T     LCIS+CSTCP IC+ P         PPP   +P    PPP     +  PP + S S         PPPP  
Subjt:  LGLWIVALALFSASSEAQMSVPSTG---QLCISDCSTCPVICTAP---------PPPRSYIP----PPPNFDGAYMAPPATPSYS------FWGPPPPVA

Query:  NYFLGAQP--------SGEMP-----------QTVGPRD--YSYPYYYFYSSNS
         YF    P         G  P           Q+ G +   Y +PY+YFY++++
Subjt:  NYFLGAQP--------SGEMP-----------QTVGPRD--YSYPYYYFYSSNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCATACCAAAACGATGCCGTTTCTGGGAATAAGGCGAATTCTTGGCTCTCTGGGGCTTTGGATTGTCGCATTGGCTTTGTTTTCAGCATCATCCGAGGCCCAAAT
GTCGGTCCCCTCCACCGGACAGCTGTGCATTAGCGACTGCTCCACGTGTCCGGTGATTTGCACGGCGCCGCCTCCTCCACGCTCTTACATTCCGCCTCCGCCGAACTTTG
ATGGTGCGTATATGGCGCCGCCGGCTACACCGTCGTATTCTTTCTGGGGTCCGCCGCCTCCGGTTGCGAATTATTTCTTGGGCGCACAACCTTCCGGTGAAATGCCTCAG
ACGGTGGGGCCTCGGGATTATTCTTACCCTTACTACTATTTTTACAGTTCAAATTCAGTCGTGCAAAAAATTGAAGTCATTTCAGATCCAAATGGTAAAACGATAACCGG
TTTCGTTAACAAGCGGAGACGGAGCTCATCGGCTCGCCGGCAGATCTGTGACTCTACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCATACCAAAACGATGCCGTTTCTGGGAATAAGGCGAATTCTTGGCTCTCTGGGGCTTTGGATTGTCGCATTGGCTTTGTTTTCAGCATCATCCGAGGCCCAAAT
GTCGGTCCCCTCCACCGGACAGCTGTGCATTAGCGACTGCTCCACGTGTCCGGTGATTTGCACGGCGCCGCCTCCTCCACGCTCTTACATTCCGCCTCCGCCGAACTTTG
ATGGTGCGTATATGGCGCCGCCGGCTACACCGTCGTATTCTTTCTGGGGTCCGCCGCCTCCGGTTGCGAATTATTTCTTGGGCGCACAACCTTCCGGTGAAATGCCTCAG
ACGGTGGGGCCTCGGGATTATTCTTACCCTTACTACTATTTTTACAGTTCAAATTCAGTCGTGCAAAAAATTGAAGTCATTTCAGATCCAAATGGTAAAACGATAACCGG
TTTCGTTAACAAGCGGAGACGGAGCTCATCGGCTCGCCGGCAGATCTGTGACTCTACGTGA
Protein sequenceShow/hide protein sequence
MCHTKTMPFLGIRRILGSLGLWIVALALFSASSEAQMSVPSTGQLCISDCSTCPVICTAPPPPRSYIPPPPNFDGAYMAPPATPSYSFWGPPPPVANYFLGAQPSGEMPQ
TVGPRDYSYPYYYFYSSNSVVQKIEVISDPNGKTITGFVNKRRRSSSARRQICDST