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Clc05G20180 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G20180
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransmembrane protein
Genome locationClcChr05:29000288..29000861
RNA-Seq ExpressionClc05G20180
SyntenyClc05G20180
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063287.1 hypothetical protein E6C27_scaffold205G001100 [Cucumis melo var. makuwa]1.1e-5692.8Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV
        MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPFL+IF ANS+AVSGTVGSAAMRTK+RSAQEAERTSPWG 
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
KAG6608597.1 hypothetical protein SDJN03_01939, partial [Cucurbita argyrosperma subsp. sororia]7.4e-4585.96Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV
        MSW  EER  EWKYGWAERTMASMSLPPMPLLAFLGVV+LLLSLQSQ M FDFKLFLLALPFLLIF+ANS+ V+G+V S AMRTKNRSAQEAE+TSPWG 
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV

Query:  AVLLFLLLILLWNR
        AVLLFLLLILLWNR
Subjt:  AVLLFLLLILLWNR
KAG7037914.1 hypothetical protein SDJN02_01545, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-4585.96Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV
        MSW  EER PEWKYGWAERT+ASMS PPMPLLAFLGVV+LLLSLQSQ+M FDFKLFLLALPFLLIF+ANS+ VSG+V S AMRTKNRSAQEAE+TSPWG 
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV

Query:  AVLLFLLLILLWNR
        AVLLFLLLILLWNR
Subjt:  AVLLFLLLILLWNR
KGN60038.1 hypothetical protein Csa_001668 [Cucumis sativus]1.4e-5692Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV
        MSWVVEERGPEWKYGW ER M+SMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPFL+IFVANS+AVSGTVGSA+MRTK+RSAQEAERTSPWG 
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
TYK31488.1 hypothetical protein E5676_scaffold455G008040 [Cucumis melo var. makuwa]3.2e-5692Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV
        MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPF +IF ANS+AVSGTVGSAAMRTK+RSAQEAERTSPWG 
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
TrEMBL top hitse value%identityAlignment
A0A0A0LE80 Uncharacterized protein7.0e-5792Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV
        MSWVVEERGPEWKYGW ER M+SMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPFL+IFVANS+AVSGTVGSA+MRTK+RSAQEAERTSPWG 
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
A0A5A7V8G0 Uncharacterized protein5.4e-5792.8Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV
        MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPFL+IF ANS+AVSGTVGSAAMRTK+RSAQEAERTSPWG 
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
A0A5D3E6P1 Uncharacterized protein1.6e-5692Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV
        MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVVVLLLSLQSQQMV DFKL LLALPF +IF ANS+AVSGTVGSAAMRTK+RSAQEAERTSPWG 
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV

Query:  AVLLFLLLILLWNRPYFRSKWSPPS
        AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  AVLLFLLLILLWNRPYFRSKWSPPS
A0A6J1FL09 uncharacterized protein LOC1114462111.0e-4485.09Show/hide
Query:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV
        MSW  EER PEWKYGWAERT+ASMS PPMPLLAFLGVV+LLLSLQSQ+M  DFKLFLLALPFLLIF+ANS+ VSG+V S AMRTKNRSAQEAE+TSPWG 
Subjt:  MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQEAERTSPWGV

Query:  AVLLFLLLILLWNR
        AVLLFLLLILLWNR
Subjt:  AVLLFLLLILLWNR
W9RNV3 Uncharacterized protein1.5e-2248.51Show/hide
Query:  MSWVVEE--RGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSL--------QSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQ
        M W++ E   G  WK GW ERT+AS++ PP+PLLA +G+VV+LLS+        Q Q+ V  F+LFLL LP +LIFVA+S+   GTV     RTK+ +  
Subjt:  MSWVVEE--RGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSL--------QSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSAAMRTKNRSAQ

Query:  EAERTSPWGVAVLLFLLLILLWNRPYFRSKWSPP
        E   T PWGV VLL +L +L+  + YF+SKW PP
Subjt:  EAERTSPWGVAVLLFLLLILLWNRPYFRSKWSPP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G42146.1 unknown protein7.7e-1637.04Show/hide
Query:  MSWVVEE-RGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQS--------QQMVFDFKLFLLALPFLLIFVANSIAVSGTV---GSAAMRTKNRS
        M W ++E RG  WK GW E T+ + S PP+ LLA L ++ LLL L S        ++   + KLF+L LP L +FV  S++    +    S ++R     
Subjt:  MSWVVEE-RGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQS--------QQMVFDFKLFLLALPFLLIFVANSIAVSGTV---GSAAMRTKNRS

Query:  AQEAERTSPWGVAVLLFLLLILLWNRPYFRSKWSP
        +   E   PWGV ++L LLL+L+  + YF S W P
Subjt:  AQEAERTSPWGVAVLLFLLLILLWNRPYFRSKWSP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATCGGATCTTCCAAGAACATCCTTGGTTAGGGGAAGATTGTTACACCAAACAGTAAAAGAAAAGCTTCTAACCTGGAAAGACACCATGAGTTGGGTGGTGGAGGA
AAGAGGTCCCGAGTGGAAGTATGGATGGGCTGAGAGAACAATGGCTTCCATGTCTCTCCCGCCTATGCCGCTGCTCGCATTTCTCGGTGTCGTCGTTCTTCTGCTTTCTT
TGCAGTCTCAGCAGATGGTGTTCGACTTCAAGCTATTTCTTTTGGCTTTGCCATTTTTGCTGATCTTTGTTGCAAATTCTATTGCTGTGTCTGGTACAGTTGGTTCTGCT
GCCATGAGAACTAAGAACAGGTCGGCTCAGGAGGCCGAGAGGACCTCACCTTGGGGCGTCGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTGTGGAACCGTCCTTACTT
TCGGTCAAAGTGGTCACCTCCATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATCGGATCTTCCAAGAACATCCTTGGTTAGGGGAAGATTGTTACACCAAACAGTAAAAGAAAAGCTTCTAACCTGGAAAGACACCATGAGTTGGGTGGTGGAGGA
AAGAGGTCCCGAGTGGAAGTATGGATGGGCTGAGAGAACAATGGCTTCCATGTCTCTCCCGCCTATGCCGCTGCTCGCATTTCTCGGTGTCGTCGTTCTTCTGCTTTCTT
TGCAGTCTCAGCAGATGGTGTTCGACTTCAAGCTATTTCTTTTGGCTTTGCCATTTTTGCTGATCTTTGTTGCAAATTCTATTGCTGTGTCTGGTACAGTTGGTTCTGCT
GCCATGAGAACTAAGAACAGGTCGGCTCAGGAGGCCGAGAGGACCTCACCTTGGGGCGTCGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTGTGGAACCGTCCTTACTT
TCGGTCAAAGTGGTCACCTCCATCTTAACTGTCCAGCACCGATG
Protein sequenceShow/hide protein sequence
MRSDLPRTSLVRGRLLHQTVKEKLLTWKDTMSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVVLLLSLQSQQMVFDFKLFLLALPFLLIFVANSIAVSGTVGSA
AMRTKNRSAQEAERTSPWGVAVLLFLLLILLWNRPYFRSKWSPPS