; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G20200 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G20200
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGibberellin regulated protein
Genome locationClcChr05:29011997..29018203
RNA-Seq ExpressionClc05G20200
SyntenyClc05G20200
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3476318.1 gibberellin-regulated protein 11-like [Gossypium australe]4.7e-4539.62Show/hide
Query:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG
        MAI K  + + L    LL L  A++     +   G A  P K   IDCGGACA+RC+LSSRP+LCKRACGTCCARC+CVPPGT+G  E CPCYA++TTHG
Subjt:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG

Query:  GRRK----------------------------------------------------------------------STKGL---------------------
        GRRK                                                                      S  G+                     
Subjt:  GRRK----------------------------------------------------------------------STKGL---------------------

Query:  ---------------------VFAMLLIAFAMLL-LMESGQ--MVITTQVDNPLPRE-IDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNY
                             + A LLI+  +LL  +ES    MVIT  V+     + IDC EAC  RC+LSSRP +CKRACGTCC RC CVPPGTSGNY
Subjt:  ---------------------VFAMLLIAFAMLL-LMESGQ--MVITTQVDNPLPRE-IDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNY

Query:  DVCPCYANMTTHGGRHKC
        DVCPCY +MTTHGG+HKC
Subjt:  DVCPCYANMTTHGGRHKC

KAG8492134.1 hypothetical protein CXB51_015749 [Gossypium anomalum]5.0e-4741.06Show/hide
Query:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG
        MAI K  + + L    LL L  A++         G A  P K   IDCGGACA+RC+LSSRP+LCKRACGTCCARC+CVPPGT+G  E CPCYA++TTHG
Subjt:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG

Query:  GRRKSTKGL-------------------------------------------------------------------------------------------
        GRRK+ + +                                                                                           
Subjt:  GRRKSTKGL-------------------------------------------------------------------------------------------

Query:  -----VFAMLLIAFAMLL-LMESGQ--MVITTQVDNPLPRE-IDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRH
             + A LLI+  +LL  +ES    MVIT  V+     + IDC EAC  RC+LSSRP +CKRACGTCC RC CVPPGTSGNYDVCPCY +MTTHGG+H
Subjt:  -----VFAMLLIAFAMLL-LMESGQ--MVITTQVDNPLPRE-IDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRH

Query:  KC
        KC
Subjt:  KC

KAG8494278.1 hypothetical protein CXB51_011657 [Gossypium anomalum]2.5e-5451.74Show/hide
Query:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG
        MAI    LI  L IS LL      +   + ++  G  T+P K   IDCGGACA+RC+LSSRP+LCKRACGTCCARC+CVPPGT+G  E CPCYA++TTHG
Subjt:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG

Query:  GRRKS--------------------------TKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPL--PREIDCGEACDARCRLSSRPKVCKRACGTCCGR
        G+RK                            K L+ ++LL  F +     S  +VI   V+      ++IDCG AC  RC+LSSRP +CKRACGTCC R
Subjt:  GRRKS--------------------------TKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPL--PREIDCGEACDARCRLSSRPKVCKRACGTCCGR

Query:  CQCVPPGTSGNYDVCPCYANMTTHGGRHKC
        C CVPPGT  NYDVCPCY +MTTHGGRHKC
Subjt:  CQCVPPGTSGNYDVCPCYANMTTHGGRHKC

RYR00948.1 hypothetical protein Ahy_B06g079823 [Arachis hypogaea]2.4e-4949.77Show/hide
Query:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG
        MA+ K LL + L  +SLL++      ++      G       +Q IDC GACA+RC+LSSRPNLC+RACGTCC RC+CVPPGT+G  E CPCYA++TTHG
Subjt:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG

Query:  GRRK-------------STKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVC
        GRRK             +    + A +LI+  +L ++ES                IDC   C  RC LSSRP +C+RACGTCC RC CVP GTSG+Y+ C
Subjt:  GRRK-------------STKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVC

Query:  PCYANMTTHGGRHKC
        PCYAN TTHGG HKC
Subjt:  PCYANMTTHGGRHKC

XP_008466485.1 PREDICTED: gibberellin-regulated protein 1-like [Cucumis melo]7.9e-4590.82Show/hide
Query:  STKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC
        +TKGLVF MLLIAFAM LLMESGQM+ITTQVDNPLP+EIDCG+ACDARCRLSSR K+CKRACGTCC RCQCVPPGTSGNYDVCPCYANMTTHGGRHKC
Subjt:  STKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC

TrEMBL top hitse value%identityAlignment
A0A1S3CRE3 gibberellin-regulated protein 1-like3.8e-4590.82Show/hide
Query:  STKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC
        +TKGLVF MLLIAFAM LLMESGQM+ITTQVDNPLP+EIDCG+ACDARCRLSSR K+CKRACGTCC RCQCVPPGTSGNYDVCPCYANMTTHGGRHKC
Subjt:  STKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC

A0A444YG93 Uncharacterized protein1.2e-4949.77Show/hide
Query:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG
        MA+ K LL + L  +SLL++      ++      G       +Q IDC GACA+RC+LSSRPNLC+RACGTCC RC+CVPPGT+G  E CPCYA++TTHG
Subjt:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG

Query:  GRRK-------------STKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVC
        GRRK             +    + A +LI+  +L ++ES                IDC   C  RC LSSRP +C+RACGTCC RC CVP GTSG+Y+ C
Subjt:  GRRK-------------STKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVC

Query:  PCYANMTTHGGRHKC
        PCYAN TTHGG HKC
Subjt:  PCYANMTTHGGRHKC

A0A5A7V5C1 Gibberellin-regulated protein 1-like3.8e-4590.82Show/hide
Query:  STKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC
        +TKGLVF MLLIAFAM LLMESGQM+ITTQVDNPLP+EIDCG+ACDARCRLSSR K+CKRACGTCC RCQCVPPGTSGNYDVCPCYANMTTHGGRHKC
Subjt:  STKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC

A0A5B6W509 Gibberellin-regulated protein 11-like2.3e-4539.62Show/hide
Query:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG
        MAI K  + + L    LL L  A++     +   G A  P K   IDCGGACA+RC+LSSRP+LCKRACGTCCARC+CVPPGT+G  E CPCYA++TTHG
Subjt:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG

Query:  GRRK----------------------------------------------------------------------STKGL---------------------
        GRRK                                                                      S  G+                     
Subjt:  GRRK----------------------------------------------------------------------STKGL---------------------

Query:  ---------------------VFAMLLIAFAMLL-LMESGQ--MVITTQVDNPLPRE-IDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNY
                             + A LLI+  +LL  +ES    MVIT  V+     + IDC EAC  RC+LSSRP +CKRACGTCC RC CVPPGTSGNY
Subjt:  ---------------------VFAMLLIAFAMLL-LMESGQ--MVITTQVDNPLPRE-IDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNY

Query:  DVCPCYANMTTHGGRHKC
        DVCPCY +MTTHGG+HKC
Subjt:  DVCPCYANMTTHGGRHKC

A0A803QWJ7 Uncharacterized protein1.7e-4851.98Show/hide
Query:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG
        MA+ K L+I+ LF  SLLVL   E  +    ++  VA   +K ++IDCGG+CA+RC+LSSRP LCKRACGTCC RC+CVPPGT+G  E        +T  
Subjt:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG

Query:  GRRKSTKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRH
                                        + + +PLP++IDC  ACDARC  SSRP++CKRACGTCC RC CVPPGTSGNYD CPCYANMTTHGGRH
Subjt:  GRRKSTKGLVFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRH

Query:  KC
        KC
Subjt:  KC

SwissProt top hitse value%identityAlignment
F4IQJ4 Gibberellin-regulated protein 114.4e-2256.73Show/hide
Query:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG
        MA+ + LL + L   SLLVL F      MV S D           IDC   C  RC LSSRPNLC RACGTCCARC+CV PGTSG Y+ CPCY ++TTHG
Subjt:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG

Query:  GRRK
        GRRK
Subjt:  GRRK

P46687 Gibberellin-regulated protein 37.8e-1964.52Show/hide
Query:  IQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRK
        +  IDCGG C  RC  SSRPNLC RAC +CC RC+CVPPGT+G +  CPCYA++TT GGR K
Subjt:  IQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRK

P46688 Gibberellin-regulated protein 22.7e-1967.21Show/hide
Query:  EIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC
        +IDCG  C  RC  SSR K+C RAC +CC RC CVPPGTSGN  +CPCYA++TTHGGR KC
Subjt:  EIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC

P46689 Gibberellin-regulated protein 15.6e-2559.14Show/hide
Query:  VFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC
        + A LLI+  +L L+++   V  +Q  N   ++IDCG AC ARCRLS RP++C RACGTCC RC CVPPGT GNYD C CYA++TTHGGR KC
Subjt:  VFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC

Q93X17 Snakin-21.1e-2556.88Show/hide
Query:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPV-----KIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYAN
        MAI K      LF S LL L   E+   +    D V +N +       + IDCGGACA+RC+LSSRP LC RACGTCCARC+CVPPGTSG  ETCPCYA+
Subjt:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPV-----KIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYAN

Query:  MTTHGGRRK
        +TTHG +RK
Subjt:  MTTHGGRRK

Arabidopsis top hitse value%identityAlignment
AT1G75750.1 GAST1 protein homolog 14.0e-2659.14Show/hide
Query:  VFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC
        + A LLI+  +L L+++   V  +Q  N   ++IDCG AC ARCRLS RP++C RACGTCC RC CVPPGT GNYD C CYA++TTHGGR KC
Subjt:  VFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC

AT1G75750.2 GAST1 protein homolog 12.3e-2658.06Show/hide
Query:  VFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC
        + A LLI+  +L L+++ +    +Q  N   ++IDCG AC ARCRLS RP++C RACGTCC RC CVPPGT GNYD C CYA++TTHGGR KC
Subjt:  VFAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC

AT2G18420.1 Gibberellin-regulated family protein3.1e-2356.73Show/hide
Query:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG
        MA+ + LL + L   SLLVL F      MV S D           IDC   C  RC LSSRPNLC RACGTCCARC+CV PGTSG Y+ CPCY ++TTHG
Subjt:  MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHG

Query:  GRRK
        GRRK
Subjt:  GRRK

AT4G09600.1 GAST1 protein homolog 35.5e-2064.52Show/hide
Query:  IQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRK
        +  IDCGG C  RC  SSRPNLC RAC +CC RC+CVPPGT+G +  CPCYA++TT GGR K
Subjt:  IQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRK

AT4G09610.1 GAST1 protein homolog 21.9e-2067.21Show/hide
Query:  EIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC
        +IDCG  C  RC  SSR K+C RAC +CC RC CVPPGTSGN  +CPCYA++TTHGGR KC
Subjt:  EIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATTCCTAAACCTCTACTTATCACTTGTCTTTTCATCTCATCTCTTCTCGTTCTTTGTTTTGCTGAAGAAACAAATAAGATGGTTAACTCAATGGATGGTGTTGC
GACTAATCCTGTTAAGATTCAAAACATTGATTGTGGAGGAGCTTGTGCGTCTAGGTGCAAATTATCGTCAAGGCCCAACCTATGCAAGAGGGCATGCGGCACGTGCTGTG
CACGTTGCAGCTGCGTGCCTCCGGGCACTTCTGGCGGCTACGAAACCTGCCCTTGCTATGCCAACATGACCACTCACGGCGGCCGGAGAAAGTCGACTAAAGGTCTTGTG
TTTGCTATGCTTCTCATTGCTTTTGCTATGCTGCTCCTTATGGAATCAGGCCAAATGGTTATCACAACTCAGGTGGATAACCCTCTTCCTCGCGAGATAGATTGTGGGGA
GGCTTGTGATGCGAGGTGCCGATTATCGTCGAGGCCGAAGGTCTGCAAGAGGGCATGTGGAACCTGTTGTGGTCGCTGTCAATGTGTTCCACCGGGCACTTCAGGCAACT
ACGATGTTTGTCCCTGCTATGCCAATATGACCACACATGGTGGCAGGCACAAATGTTCTGAAATGTTCAAAAACTATGCAAGGGAGATGCAGGGGACTTAA
mRNA sequenceShow/hide mRNA sequence
ATTCATTCTACGTCCCCCAAACACTCCTGAGTTCTAACTTCTCTCTCCATCTTCAATCCCATGGCCATTCCTAAACCTCTACTTATCACTTGTCTTTTCATCTCATCTCT
TCTCGTTCTTTGTTTTGCTGAAGAAACAAATAAGATGGTTAACTCAATGGATGGTGTTGCGACTAATCCTGTTAAGATTCAAAACATTGATTGTGGAGGAGCTTGTGCGT
CTAGGTGCAAATTATCGTCAAGGCCCAACCTATGCAAGAGGGCATGCGGCACGTGCTGTGCACGTTGCAGCTGCGTGCCTCCGGGCACTTCTGGCGGCTACGAAACCTGC
CCTTGCTATGCCAACATGACCACTCACGGCGGCCGGAGAAAGTCGACTAAAGGTCTTGTGTTTGCTATGCTTCTCATTGCTTTTGCTATGCTGCTCCTTATGGAATCAGG
CCAAATGGTTATCACAACTCAGGTGGATAACCCTCTTCCTCGCGAGATAGATTGTGGGGAGGCTTGTGATGCGAGGTGCCGATTATCGTCGAGGCCGAAGGTCTGCAAGA
GGGCATGTGGAACCTGTTGTGGTCGCTGTCAATGTGTTCCACCGGGCACTTCAGGCAACTACGATGTTTGTCCCTGCTATGCCAATATGACCACACATGGTGGCAGGCAC
AAATGTTCTGAAATGTTCAAAAACTATGCAAGGGAGATGCAGGGGACTTAA
Protein sequenceShow/hide protein sequence
MAIPKPLLITCLFISSLLVLCFAEETNKMVNSMDGVATNPVKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYANMTTHGGRRKSTKGLV
FAMLLIAFAMLLLMESGQMVITTQVDNPLPREIDCGEACDARCRLSSRPKVCKRACGTCCGRCQCVPPGTSGNYDVCPCYANMTTHGGRHKCSEMFKNYAREMQGT