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Clc05G20380 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G20380
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationClcChr05:29122674..29124746
RNA-Seq ExpressionClc05G20380
SyntenyClc05G20380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008446752.1 PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo]2.8e-4273.91Show/hide
Query:  RKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRR---GSAAAGGGENGGGSTPHAGGGTTVIP
        R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY  + GK G  NQI RRYS SAITVS+ IRR   G+AAAGGGENGGGS PH GGGT VIP
Subjt:  RKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRR---GSAAAGGGENGGGSTPHAGGGTTVIP

Query:  VYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM
        VYAAGSAQARHRQGRPHNAGNGY+ N GLL+A VLA +
Subjt:  VYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM

XP_011655831.2 glycine-rich protein DOT1 [Cucumis sativus]2.2e-3966.67Show/hide
Query:  MGTRKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGS---------------AAAGGGENG
        MG R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY ++HGK G  NQI+RRYS+SAITVS+ IRRGS               AAAGGGEN 
Subjt:  MGTRKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGS---------------AAAGGGENG

Query:  GGSTPHAGGGTTVIPVYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM
        GGS P  GGGT VIPVYAAGSAQA HRQGR HNAGN Y+ NMGLL+A VLA +
Subjt:  GGSTPHAGGGTTVIPVYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM

XP_022957462.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]2.3e-3666.67Show/hide
Query:  MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHA-GGGTTVIPV
        MG R+ +TL+FLLFCST+P  S +AL QQILPTESNY  +T  E+HGKDG  N+I   YS  AITVS GI  GS AAGGGENGGG  P A GGG  VIPV
Subjt:  MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHA-GGGTTVIPV

Query:  YAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVML
        YAAGSAQA HRQGR  NAGN Y+ NMGLL+A+VLA ++
Subjt:  YAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVML

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]3.0e-3667.15Show/hide
Query:  MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHA-GGGTTVIPV
        MG R+ +TL+FLLFCST+P  S +AL QQILPTESNY  +T  E+HGKDG  N+I   YS  AITVS GI  GS AAGGGENGGG  P A GGG  VIPV
Subjt:  MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHA-GGGTTVIPV

Query:  YAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM
        YAAGSAQA HRQGR  NAGN Y+ NMGLL+A+VLA +
Subjt:  YAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM

XP_038892711.1 uncharacterized protein LOC120081693 [Benincasa hispida]1.8e-4170.59Show/hide
Query:  MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHAGGGTTVIPVY
        MG R+ + LI LL CSTM ISS AAL QQI PTESNYQ +TY E+  KDG  NQI RRYS + ITVS+GI +GSA AGGGENGGGS PH GGGT VIPVY
Subjt:  MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHAGGGTTVIPVY

Query:  AAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM
        AAGSAQA HRQGRPHNAGN ++ N GLL+A VLA +
Subjt:  AAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM

TrEMBL top hitse value%identityAlignment
A0A0A0KUR6 Uncharacterized protein3.6e-4068.46Show/hide
Query:  MGTRKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGS-----------AAAGGGENGGGST
        MG R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY ++HGK G  NQI+RRYS+SAITVS+ IRRGS           AAAGGGEN GGS 
Subjt:  MGTRKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGS-----------AAAGGGENGGGST

Query:  PHAGGGTTVIPVYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM
        P  GGGT VIPVYAAGSAQA HRQGR HNAGN Y+ NMGLL+A VLA +
Subjt:  PHAGGGTTVIPVYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM

A0A1S3BFU8 uncharacterized protein LOC1034893821.3e-4273.91Show/hide
Query:  RKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRR---GSAAAGGGENGGGSTPHAGGGTTVIP
        R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY  + GK G  NQI RRYS SAITVS+ IRR   G+AAAGGGENGGGS PH GGGT VIP
Subjt:  RKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRR---GSAAAGGGENGGGSTPHAGGGTTVIP

Query:  VYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM
        VYAAGSAQARHRQGRPHNAGNGY+ N GLL+A VLA +
Subjt:  VYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM

A0A5A7SUI0 Uncharacterized protein1.3e-4273.91Show/hide
Query:  RKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRR---GSAAAGGGENGGGSTPHAGGGTTVIP
        R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY  + GK G  NQI RRYS SAITVS+ IRR   G+AAAGGGENGGGS PH GGGT VIP
Subjt:  RKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRR---GSAAAGGGENGGGSTPHAGGGTTVIP

Query:  VYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM
        VYAAGSAQARHRQGRPHNAGNGY+ N GLL+A VLA +
Subjt:  VYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM

A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like1.1e-3666.67Show/hide
Query:  MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHA-GGGTTVIPV
        MG R+ +TL+FLLFCST+P  S +AL QQILPTESNY  +T  E+HGKDG  N+I   YS  AITVS GI  GS AAGGGENGGG  P A GGG  VIPV
Subjt:  MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHA-GGGTTVIPV

Query:  YAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVML
        YAAGSAQA HRQGR  NAGN Y+ NMGLL+A+VLA ++
Subjt:  YAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVML

A0A6J1JB47 uncharacterized protein LOC1114851591.6e-3564.96Show/hide
Query:  MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHA-GGGTTVIPV
        MG R+ ++L+FLLFCST+P  S+A   QQILPTE NY  +T  E+HG+DG  N+I   YS  AITVS GI  GS AAGGGENGGG  P A GGG  VIPV
Subjt:  MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHA-GGGTTVIPV

Query:  YAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM
        YAAGSAQA HRQGRP NAGN Y+ NMGLL+A+VLA +
Subjt:  YAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAACAAGAAAAGGGATAACATTGATTTTCTTGCTGTTTTGTTCTACCATGCCCATTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGAGTCTAATTA
CCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGACAGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAA
GCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGGTACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGC
CAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAGCCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGGT
TGTCTCCATAGGGACACAAGAAACATTGTTACAAACTTACATGTGCTGA
mRNA sequenceShow/hide mRNA sequence
CTAAACCCTCTGCTCCGTGTCCTTAAAAGGGATAAGTTTGGCTTTAGTGGATCAGAAGGAGAAAAAGAACCTAAAAACTTCCACTTCCCCACCGTTTTTGTATAAATAAA
TCAAACCATCTTCCTATAACCACATACACAGAAGCTAGCTGTTTCTATTACAATGGGAACAAGAAAAGGGATAACATTGATTTTCTTGCTGTTTTGTTCTACCATGCCCA
TTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGAGTCTAATTACCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGAC
AGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAAGCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGG
TACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAG
CCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGGTTGTCTCCATAGGGACACAAGAAACATTGTTACAAACTTACATGTGCTGATTGATGTGT
GTGCTTCCATCTTTCTTGTTGGACCTTCATTTCCTGTTAAGGTGTCAAGCAAATGATTGTATGTACAGAGACAGAACCT
Protein sequenceShow/hide protein sequence
MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHAGGGTTVIPVYAAGSAQARHR
QGRPHNAGNGYDKNMGLLIATVLAVMLISIEVSDIKVVSIGTQETLLQTYMC