CuGenDBv2

Gene ID	Clc05G20480
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Mitochondrial
Genome location	ClcChr05:29221626..29225069
RNA-Seq Expression	Clc05G20480
Synteny	Clc05G20480
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7024167.1 hypothetical protein SDJN02_12980, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-60

78.88

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTP+QTIRNMILEKG+LLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE

Query:  TWPVIIPDEELNQPFPSIKLWLSFCHSFQEHVSRASVMARHIGKRALLEKQKTSSNVVAVN
        TWPVIIPDEELNQP PSIK+ L     F                   LEKQKTSSN + V+
Subjt:  TWPVIIPDEELNQPFPSIKLWLSFCHSFQEHVSRASVMARHIGKRALLEKQKTSSNVVAVN

XP_022974805.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima]

1.4e-57

96.64

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE

Query:  TWPVIIPDEELNQPFPSIK
        TWPVIIPDEELNQP PSIK
Subjt:  TWPVIIPDEELNQPFPSIK

XP_022974807.1 uncharacterized protein LOC111473560 isoform X2 [Cucurbita maxima]

1.4e-57

96.64

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE

Query:  TWPVIIPDEELNQPFPSIK
        TWPVIIPDEELNQP PSIK
Subjt:  TWPVIIPDEELNQPFPSIK

XP_022974808.1 uncharacterized protein LOC111473560 isoform X3 [Cucurbita maxima]

1.3e-58

95.93

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE

Query:  TWPVIIPDEELNQPFPSIKLWLS
        TWPVIIPDEELNQP PSIKL LS
Subjt:  TWPVIIPDEELNQPFPSIKLWLS

XP_023536065.1 uncharacterized protein LOC111797318 [Cucurbita pepo subsp. pepo]

8.2e-58

96.64

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE
        MLKFLSKVK+EFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRN ILEKG+LLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE

Query:  TWPVIIPDEELNQPFPSIK
        TWPVIIPDEELNQP PSIK
Subjt:  TWPVIIPDEELNQPFPSIK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CC86 uncharacterized protein LOC111010210

1.3e-56

94.12

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE

Query:  TWPVIIPDEELNQPFPSIK
        TWP++IP+EEL QP PSIK
Subjt:  TWPVIIPDEELNQPFPSIK

A0A6J1IB98 uncharacterized protein LOC111473560 isoform X2

6.7e-58

96.64

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE

Query:  TWPVIIPDEELNQPFPSIK
        TWPVIIPDEELNQP PSIK
Subjt:  TWPVIIPDEELNQPFPSIK

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

6.7e-58

96.64

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE

Query:  TWPVIIPDEELNQPFPSIK
        TWPVIIPDEELNQP PSIK
Subjt:  TWPVIIPDEELNQPFPSIK

A0A6J1IHE6 uncharacterized protein LOC111473560 isoform X3

6.1e-59

95.93

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE

Query:  TWPVIIPDEELNQPFPSIKLWLS
        TWPVIIPDEELNQP PSIKL LS
Subjt:  TWPVIIPDEELNQPFPSIKLWLS

A0A6J1IZE5 uncharacterized protein LOC111481279

9.7e-57

95.8

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIR  ILEKG+LLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE

Query:  TWPVIIPDEELNQPFPSIK
        TWPVIIPDEELN P PSIK
Subjt:  TWPVIIPDEELNQPFPSIK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

1.3e-50

79.83

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE
        MLKFLSKV+IEFN LDPRLASC+EFLAQCNARKAKESNP CQ++VKRRTD+ PPQI VTFVNGVEE FDA +T AQ+IR MIL+KG+ LETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGE

Query:  TWPVIIPDEELNQPFPSIK
         WPVIIPDEEL Q  P +K
Subjt:  TWPVIIPDEELNQPFPSIK

Sequences

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CDS sequence

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ATGTTGAAGTTTCTGTCTAAAGTGAAGATCGAATTCAATGCCCTCGATCCACGCTTAGCGTCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGAAAGGCCAAGGAATC
GAATCCCGCTTGCCAATTGATCGTCAAGCGCCGAACCGACGACCATCCGCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTTGATGCTACCTCTACTC
CTGCTCAAACAATCAGGAATATGATTCTTGAAAAGGGCAAACTCCTTGAGACCGAACAAATGTTCCGAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGACGAGGAG
CTCAATCAGCCATTTCCCAGTATCAAGCTGTGGCTCAGCTTCTGTCATAGTTTTCAAGAGCATGTTTCAAGAGCTTCTGTCATGGCTCGGCACATAGGCAAAAGAGCGCT
CCTAGAAAAGCAGAAGACAAGCAGTAACGTTGTCGCAGTCAATTATAATTACGGATAG

mRNA sequence

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CCACCTTCAAAGGCTTAGGCTCAGTCTTCTTCTCGCAGCCCTTTTTGTTCGAAGGTTGCAGGGAAAGGCAATAAGCTGCGATGTTGAAGTTTCTGTCTAAAGTGAAGATC
GAATTCAATGCCCTCGATCCACGCTTAGCGTCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGAAAGGCCAAGGAATCGAATCCCGCTTGCCAATTGATCGTCAAGCG
CCGAACCGACGACCATCCGCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTTGATGCTACCTCTACTCCTGCTCAAACAATCAGGAATATGATTCTTG
AAAAGGGCAAACTCCTTGAGACCGAACAAATGTTCCGAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGACGAGGAGCTCAATCAGCCATTTCCCAGTATCAAGCTG
TGGCTCAGCTTCTGTCATAGTTTTCAAGAGCATGTTTCAAGAGCTTCTGTCATGGCTCGGCACATAGGCAAAAGAGCGCTCCTAGAAAAGCAGAAGACAAGCAGTAACGT
TGTCGCAGTCAATTATAATTACGGATAGATTGGAAAGAGAGGGGTGCATACTATTTTCATAACCTTGGGCTGTCATCAATAGAATCAATTCCCGTGGAGTAGAGCACTTT
CTGAGATGTTTTTCGTTCTGAATTTTATAGGGATGTTTCCTAGTCTTGTCTTCTTAGATGTAAAAGATTTCGGCATCAGGTTCTAAGTTCTAAATAATGGTCTGTGGAGG
CTGTGTTGGTTTTCATAAGCGATTTGTTTATGATAACTTGTTACCGATGCATGTTATAACCAATTTGAAATTTGCACTGGTAGTGGTAGGATTTGTTAAGCCATCAATTC
CAGATACCGAA

Protein sequence

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MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEE
LNQPFPSIKLWLSFCHSFQEHVSRASVMARHIGKRALLEKQKTSSNVVAVNYNYG

Clc05G20480 (gene) of Watermelon (cordophanus) v2 genome