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Clc05G20810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G20810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA polymerase epsilon catalytic subunit A, putative
Genome locationClcChr05:29526922..29527834
RNA-Seq ExpressionClc05G20810
SyntenyClc05G20810
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147861.1 uncharacterized protein LOC101222738 [Cucumis sativus]1.6e-6286.11Show/hide
Query:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEK-KMEYGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA
        MGSLMAGWDSP TDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAIL P+E+ EEK K   G NLQRSASMPP NT+KGL  +M+SET LEKP+KN 
Subjt:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEK-KMEYGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA

Query:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA
        WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGG+SA
Subjt:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA

XP_008466545.1 PREDICTED: uncharacterized protein LOC103503930 [Cucumis melo]4.3e-6386.11Show/hide
Query:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEKKME-YGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA
        MGSLMAGWDSP TDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAIL P+E+ EEK+ E  G NLQRSASMPP NT+KGLL +++SET LEKP+KN 
Subjt:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEKKME-YGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA

Query:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA
        WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGG+SA
Subjt:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA

XP_022940046.1 uncharacterized protein LOC111445795 [Cucurbita moschata]2.1e-5781.51Show/hide
Query:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEE-KKMEYGG-NLQRSASMPPSNTKKGLLSDMESETKLE-KPKK
        MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAIL P++S EE KK+E+GG NLQRS+S+PP NT+KG L DMESE  L+ KPKK
Subjt:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEE-KKMEYGG-NLQRSASMPPSNTKKGLLSDMESETKLE-KPKK

Query:  NAWWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA
        N WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRLGRGG+ A
Subjt:  NAWWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA

XP_022982140.1 uncharacterized protein LOC111481065 [Cucurbita maxima]7.1e-5882.19Show/hide
Query:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEE-KKMEYGG-NLQRSASMPPSNTKKGLLSDMESETKLE-KPKK
        MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAIL P++S EE KK+E+GG NLQRS+S+PP NT+KGLL DMESE  L+ KPKK
Subjt:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEE-KKMEYGG-NLQRSASMPPSNTKKGLLSDMESETKLE-KPKK

Query:  NAWWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA
        N WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRLGRGG+ A
Subjt:  NAWWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA

XP_038898962.1 uncharacterized protein LOC120086405 [Benincasa hispida]3.0e-6489.51Show/hide
Query:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEKKMEYGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNAW
        MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAIL P+E+ EEKKME GGNLQRSAS+PP  T KGLL +MESE  LEKPKKNAW
Subjt:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEKKMEYGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNAW

Query:  WRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA
        WRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLG GG+SA
Subjt:  WRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA

TrEMBL top hitse value%identityAlignment
A0A0A0LDC2 Uncharacterized protein7.9e-6386.11Show/hide
Query:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEK-KMEYGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA
        MGSLMAGWDSP TDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAIL P+E+ EEK K   G NLQRSASMPP NT+KGL  +M+SET LEKP+KN 
Subjt:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEK-KMEYGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA

Query:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA
        WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGG+SA
Subjt:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA

A0A1S3CST6 uncharacterized protein LOC1035039302.1e-6386.11Show/hide
Query:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEKKME-YGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA
        MGSLMAGWDSP TDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAIL P+E+ EEK+ E  G NLQRSASMPP NT+KGLL +++SET LEKP+KN 
Subjt:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEKKME-YGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA

Query:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA
        WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGG+SA
Subjt:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA

A0A5D3D820 Putative DNA polymerase epsilon catalytic subunit A2.1e-6386.11Show/hide
Query:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEKKME-YGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA
        MGSLMAGWDSP TDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAIL P+E+ EEK+ E  G NLQRSASMPP NT+KGLL +++SET LEKP+KN 
Subjt:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEKKME-YGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA

Query:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA
        WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGG+SA
Subjt:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA

A0A6J1FHE8 uncharacterized protein LOC1114457951.0e-5781.51Show/hide
Query:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEE-KKMEYGG-NLQRSASMPPSNTKKGLLSDMESETKLE-KPKK
        MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAIL P++S EE KK+E+GG NLQRS+S+PP NT+KG L DMESE  L+ KPKK
Subjt:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEE-KKMEYGG-NLQRSASMPPSNTKKGLLSDMESETKLE-KPKK

Query:  NAWWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA
        N WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRLGRGG+ A
Subjt:  NAWWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA

A0A6J1J1T2 uncharacterized protein LOC1114810653.4e-5882.19Show/hide
Query:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEE-KKMEYGG-NLQRSASMPPSNTKKGLLSDMESETKLE-KPKK
        MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAIL P++S EE KK+E+GG NLQRS+S+PP NT+KGLL DMESE  L+ KPKK
Subjt:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEE-KKMEYGG-NLQRSASMPPSNTKKGLLSDMESETKLE-KPKK

Query:  NAWWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA
        N WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRLGRGG+ A
Subjt:  NAWWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGISA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19530.1 unknown protein3.7e-2042.86Show/hide
Query:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQ-VHEEHLRAILRPYESYEEKKMEYGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA
        MGSLM+GWDS   DP+ V  RR KSLT+EEI+ FWKTKK+   EEH++A              +   + +  +   +  KK +    E+++     K + 
Subjt:  MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQ-VHEEHLRAILRPYESYEEKKMEYGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNA

Query:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMA
        WWR++ WAFLNEP E EG  N+YVSQF VA++A
Subjt:  WWRRSNWAFLNEPPETEGSGNSYVSQFHVANMA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTCTAATGGCTGGTTGGGACTCCCCGGCGACTGACCCCCAAGAAGTGAGTCACCGGAGGAATAAATCGTTGACAAAAGAAGAGATTGAAGCGTTCTGGAAAAC
GAAGAAACAAGTGCATGAAGAACATCTAAGAGCCATTTTAAGGCCATATGAGAGCTATGAGGAAAAGAAAATGGAATATGGGGGGAATCTTCAGAGATCAGCCTCTATGC
CACCATCCAATACAAAGAAGGGTTTATTATCGGACATGGAATCTGAAACTAAGCTAGAAAAGCCGAAGAAAAACGCCTGGTGGAGAAGAAGCAACTGGGCGTTTCTAAAC
GAACCGCCGGAGACGGAAGGATCTGGTAACAGCTACGTGTCGCAGTTCCACGTGGCAAACATGGCGGCTTCCAGACTTGGTCGTGGTGGCATCAGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTCTAATGGCTGGTTGGGACTCCCCGGCGACTGACCCCCAAGAAGTGAGTCACCGGAGGAATAAATCGTTGACAAAAGAAGAGATTGAAGCGTTCTGGAAAAC
GAAGAAACAAGTGCATGAAGAACATCTAAGAGCCATTTTAAGGCCATATGAGAGCTATGAGGAAAAGAAAATGGAATATGGGGGGAATCTTCAGAGATCAGCCTCTATGC
CACCATCCAATACAAAGAAGGGTTTATTATCGGACATGGAATCTGAAACTAAGCTAGAAAAGCCGAAGAAAAACGCCTGGTGGAGAAGAAGCAACTGGGCGTTTCTAAAC
GAACCGCCGGAGACGGAAGGATCTGGTAACAGCTACGTGTCGCAGTTCCACGTGGCAAACATGGCGGCTTCCAGACTTGGTCGTGGTGGCATCAGTGCTTGA
Protein sequenceShow/hide protein sequence
MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILRPYESYEEKKMEYGGNLQRSASMPPSNTKKGLLSDMESETKLEKPKKNAWWRRSNWAFLN
EPPETEGSGNSYVSQFHVANMAASRLGRGGISA