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Clc05G21050 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G21050
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein RADIALIS-like 3
Genome locationClcChr05:29655709..29657160
RNA-Seq ExpressionClc05G21050
SyntenyClc05G21050
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147867.1 protein RADIALIS-like 3 [Cucumis sativus]3.6e-4291.49Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRS PA RGF F+D+EQRMRSLQL+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]4.7e-4295.4Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

XP_022138113.1 protein RADIALIS-like 3 [Momordica charantia]6.7e-4186.32Show/hide
Query:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH
        MGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKT EEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGFCF+DEE+RMRSL+LH
Subjt:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH

XP_022941099.1 protein RADIALIS-like 3 [Cucurbita moschata]1.1e-3885.11Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH
        M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKT EEVKRHYE LVEDVNKIE+GQVPFP Y +S PAG GF FVDEEQRMRSLQLH
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]1.6e-4595.74Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH
        MGSGS+WTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCFVDEEQRMRSL+LH
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein1.7e-4291.49Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRS PA RGF F+D+EQRMRSLQL+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH

A0A1S3CPA0 protein RADIALIS-like 32.3e-4295.4Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

A0A5D3D7Z0 Protein RADIALIS-like 32.3e-4295.4Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

A0A6J1CC55 protein RADIALIS-like 33.3e-4186.32Show/hide
Query:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH
        MGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKT EEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGFCF+DEE+RMRSL+LH
Subjt:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH

A0A6J1FM85 protein RADIALIS-like 35.2e-3985.11Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH
        M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKT EEVKRHYE LVEDVNKIE+GQVPFP Y +S PAG GF FVDEEQRMRSLQLH
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 16.8e-2863.74Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL
        S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     EE+RMR+++L
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL

Q1A173 Protein RADIALIS-like 61.6e-2459.55Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+VP PNY+      R     D  ++M++L++
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL

Q58FS3 Transcription factor RADIALIS4.1e-2558.7Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL
        GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+G+VPFPNYR +G   +      +E+R R+L++
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL

Q6NNN0 Protein RADIALIS-like 31.6e-2465.75Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSG
        M S ++WT K+NK+FE ALA YD+DTP+RWHN+ARAVGGK+ EEV+RHYE L+ DVN IE+G+ P PNYR +G
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSG

Q9SIJ5 Protein RADIALIS-like 21.7e-2663.44Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQRMRSLQL
        GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+  +G + RG    DEE+RMRS++L
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQRMRSLQL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.5e-2264.29Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR
        M S S+WT+KQNK+FE ALA+YDKDTP+RW N+A+AVG K+ EEVKRHY+ LVED+  IE   VP P Y+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.1 RAD-like 63.2e-2574.24Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.2 RAD-like 61.1e-2559.55Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+VP PNY+      R     D  ++M++L++
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL

AT2G21650.1 Homeodomain-like superfamily protein1.2e-2763.44Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQRMRSLQL
        GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+  +G + RG    DEE+RMRS++L
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQRMRSLQL

AT4G39250.1 RAD-like 14.8e-2963.74Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL
        S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     EE+RMR+++L
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCTGGATCGAATTGGACGGCAAAGCAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGT
CGGCGGCAAGACGGTGGAGGAAGTCAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAGATCCGGAC
CTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGATGAGGAGTCTACAATTGCACTGA
mRNA sequenceShow/hide mRNA sequence
AGGCAAATAAGGTCGAACCCACTTGCCACATATTCGCTTCAGCTTCTCTAGTATTTAAACATCAGAAATGGCAGCAAAAACTCAACCACTGATCTGAAATTGATAGTGTT
ATAGAGACGAGGAGTTGATATTGCGATGGGGTCTGGATCGAATTGGACGGCAAAGCAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGC
GGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGTGGAGGAAGTCAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAAGTTCCT
TTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGATGAGGAGTCTACAATTGCACTGAAGTACGAATGTAGGAAGACA
AAAGTTCTATCTTTCCATTAACTATTTTCAACTAAAACTTTCAAGGTCCAACCACCAAGTGTTAATGAAATATGAAGGGCAAATGTAGCTAGTTTTCTTCACCCATCTTT
ATTGTAACTTATAGTTTTTATCTTTTATCATTAACTGTTGTGCCAATTTGTTTTATATTGAATAAATACTCTTAATCCAACC
Protein sequenceShow/hide protein sequence
MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH