; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G21080 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G21080
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTRASH domain-containing protein
Genome locationClcChr05:29690013..29694049
RNA-Seq ExpressionClc05G21080
SyntenyClc05G21080
Gene Ontology termsGO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
InterPro domainsIPR000988 - Ribosomal protein L24e-related
IPR038630 - Ribosomal protein L24e/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135604.1 probable ribosome biogenesis protein RLP24 [Momordica charantia]8.9e-6290.41Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R    IF+FCRSKCHKNFKMKRNPRKVKWTKAYRRL+GKDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRADRESRHIARR QGKKAKEL+E
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
        A+KELDQSISLVKAPS LKEDPSLTLPKIKVKVA S+AEQNQ MEE
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

XP_022976358.1 probable ribosome biogenesis protein RLP24 [Cucurbita maxima]2.3e-6291.1Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R    IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRA+RESRHIARR QGKKAKELRE
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
        A+KELDQSISLVKAP ALKEDPSLTLPKIKV V PS+AEQNQ MEE
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

XP_038903115.1 probable ribosome biogenesis protein RLP24 [Benincasa hispida]3.8e-6593.15Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R   +IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAI+KIDKVRADRESRHIARRHQGKKAKEL E
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
        AQKELDQSISLVKAPSALKEDPSLTLPKIK+KV PS+AEQ QRMEE
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

XP_038905540.1 probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida]1.3e-6594.52Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R   +IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRA+RESRHIARRHQGKKAKEL E
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
        AQKELDQSISLVKAPSALKEDPSLTLPKIKVKV PS+AEQNQRMEE
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

XP_038905541.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida]1.3e-6594.52Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R   +IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRA+RESRHIARRHQGKKAKEL E
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
        AQKELDQSISLVKAPSALKEDPSLTLPKIKVKV PS+AEQNQRMEE
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

TrEMBL top hitse value%identityAlignment
A0A6J1C1W9 probable ribosome biogenesis protein RLP244.3e-6290.41Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R    IF+FCRSKCHKNFKMKRNPRKVKWTKAYRRL+GKDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRADRESRHIARR QGKKAKEL+E
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
        A+KELDQSISLVKAPS LKEDPSLTLPKIKVKVA S+AEQNQ MEE
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

A0A6J1D3M8 probable ribosome biogenesis protein RLP241.2e-6189.73Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R    IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRL+GKDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRADRESRHIARR QGKK KEL+E
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
        A+KELDQSISLVKAPS LKEDPSLTLPKIKVKVA S+AEQNQ ME+
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

A0A6J1F7I9 probable ribosome biogenesis protein RLP241.4e-6091.49Show/hide
Query:  IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELREAQKEL
        IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPER DRNLTEETL+AIKKIDKVRA+RESRHIARR QGKKAKELREA+KEL
Subjt:  IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELREAQKEL

Query:  DQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
        DQSISLVKAP ALKEDPSL LPKIK+ V PS+AEQNQ MEE
Subjt:  DQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

A0A6J1ILW2 probable ribosome biogenesis protein RLP241.1e-6291.1Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R    IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRA+RESRHIARR QGKKAKELRE
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
        A+KELDQSISLVKAP ALKEDPSLTLPKIKV V PS+AEQNQ MEE
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

A0A6J1KWV2 probable ribosome biogenesis protein RLP249.9e-5984.93Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R    IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRA+RE+RHIARR +GKK KEL+E
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
        A+KEL+QSIS+VK P+ LKEDPSLTLPKI+VKVA S+AE+NQ MEE
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

SwissProt top hitse value%identityAlignment
O22165 Probable ribosome biogenesis protein RLP244.5e-4062.33Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R    IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HGKDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R +  K K+L +
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
          KELDQ+I +V+AP A          KIKV V+  ++ QN+ MEE
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

Q3SZ12 Probable ribosome biogenesis protein RLP241.8e-2550.41Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R  C +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R   KK KEL++
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQ--KELDQSISLVKAPSALK
         Q  KE+ Q+I L++AP A K
Subjt:  AQ--KELDQSISLVKAPSALK

Q86B05 Probable ribosome biogenesis protein RLP242.3e-2851.67Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R  C  FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+GK+MT D T EFE+KRNRP +YDR L   T+ A+ ++ K++  RE      R +G K  + ++
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKE
          KE++Q++SL++ PSAL +
Subjt:  AQKELDQSISLVKAPSALKE

Q99L28 Probable ribosome biogenesis protein RLP241.8e-2550.41Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R  C +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R   KK KEL++
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQ--KELDQSISLVKAPSALK
         Q  KE+ Q+I L++AP A K
Subjt:  AQ--KELDQSISLVKAPSALK

Q9UHA3 Probable ribosome biogenesis protein RLP242.4e-2550.41Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R  C +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R   KK KEL++
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQ--KELDQSISLVKAPSALK
         Q  KE+ Q+I L++AP A K
Subjt:  AQ--KELDQSISLVKAPSALK

Arabidopsis top hitse value%identityAlignment
AT2G44860.1 Ribosomal protein L24e family protein3.2e-4162.33Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R    IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HGKDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R +  K K+L +
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
          KELDQ+I +V+AP A          KIKV V+  ++ QN+ MEE
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

AT2G44860.2 Ribosomal protein L24e family protein3.2e-4162.33Show/hide
Query:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE
        R    IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HGKDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R +  K K+L +
Subjt:  RLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELRE

Query:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE
          KELDQ+I +V+AP A          KIKV V+  ++ QN+ MEE
Subjt:  AQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGGGTAATAAAATTCAAAATATGGAGGCAAATGGTTTGGCCGGAACGGAAAGCTAGCTTGAGAACTGTGGAAGATGTTGCTTCAGGCAAGAGTGCGAAACGTCC
GGGAATTGACGGAATATGCCGGCGGCGAACCACTGCATACCGCCCCCGCGCTCGAGGCTCCTACTCGACACCGTCTCAGCGGCTGCCGGTGCTCCGTGCACTCTCAGCCT
TCCGACGAAAGCACCGCCGCTCGCTCCTTCTTACACTCTCTCGCCTCTCCGAGTTATCAGAGTTGCCTAACTTAGTGGTTCAGCCCCTAGCGCCGTTGATTAGGGTACCC
AAGTTGCCAATCTCATCTGATGCTTACGGATTGACGAGACTACATTGTTCTATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCCCG
TAAAGTAAAATGGACTAAGGCATATAGGAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGA
ATCTCACCGAAGAGACATTGAAGGCTATTAAGAAGATCGATAAAGTCAGAGCAGATAGGGAGTCAAGACATATTGCTCGCAGACACCAAGGAAAGAAAGCAAAGGAACTC
AGAGAGGCACAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGCTCTCAAGGAAGATCCTTCGCTCACTCTTCCAAAGATAAAAGTCAAGGTGGCACC
ATCAGAAGCAGAGCAAAATCAGCGTATGGAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATAGGGTAATAAAATTCAAAATATGGAGGCAAATGGTTTGGCCGGAACGGAAAGCTAGCTTGAGAACTGTGGAAGATGTTGCTTCAGGCAAGAGTGCGAAACGTCC
GGGAATTGACGGAATATGCCGGCGGCGAACCACTGCATACCGCCCCCGCGCTCGAGGCTCCTACTCGACACCGTCTCAGCGGCTGCCGGTGCTCCGTGCACTCTCAGCCT
TCCGACGAAAGCACCGCCGCTCGCTCCTTCTTACACTCTCTCGCCTCTCCGAGTTATCAGAGTTGCCTAACTTAGTGGTTCAGCCCCTAGCGCCGTTGATTAGGGTACCC
AAGTTGCCAATCTCATCTGATGCTTACGGATTGACGAGACTACATTGTTCTATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCCCG
TAAAGTAAAATGGACTAAGGCATATAGGAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGA
ATCTCACCGAAGAGACATTGAAGGCTATTAAGAAGATCGATAAAGTCAGAGCAGATAGGGAGTCAAGACATATTGCTCGCAGACACCAAGGAAAGAAAGCAAAGGAACTC
AGAGAGGCACAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGCTCTCAAGGAAGATCCTTCGCTCACTCTTCCAAAGATAAAAGTCAAGGTGGCACC
ATCAGAAGCAGAGCAAAATCAGCGTATGGAAGAATGAGTTTGTTAATTTTATATCAATATATCAAATATTCACGTCGTAATTACTTTTTCCATATCTAGAACTGCCACAA
TTCTTGTGCAGTGGTAGATTATCTTTGTCTGTCCTTACGCAAGCATGGTTGTCCTATAGAATTTCATTATGAGAATGTTTTTTTTTTAATAGAGATAGTTCTAAAAAATT
TTGTTGGATCATTTCTTGCTGCTGTTTTTGTTGCACATTCTTGTTTCTTTCTTACGTTTTATTTATAAAGAGCATTTGGAGATAA
Protein sequenceShow/hide protein sequence
MNRVIKFKIWRQMVWPERKASLRTVEDVASGKSAKRPGIDGICRRRTTAYRPRARGSYSTPSQRLPVLRALSAFRRKHRRSLLLTLSRLSELSELPNLVVQPLAPLIRVP
KLPISSDAYGLTRLHCSIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL
REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE