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Clc05G21895 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G21895
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box domain-containing protein
Genome locationClcChr05:30296184..30296468
RNA-Seq ExpressionClc05G21895
SyntenyClc05G21895
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039746.1 F-box protein [Cucumis melo var. makuwa]8.0e-1858.42Show/hide
Query:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCIN----DHLDVDFDLEL
        MESMKLGRGLPP I  EIL +LVISNLPNLR+VSKTWN  +LDY     HEF +   NAFLL T D  P        NPKM+CI+     HLD+D D +L
Subjt:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCIN----DHLDVDFDLEL

Query:  E
        E
Subjt:  E

KAA0039747.1 F-box protein [Cucumis melo var. makuwa]5.7e-1657.58Show/hide
Query:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCI--NDHLDVDFDLELE
        ME+MKLGRGLP  I REIL  +VISN PNLR+VSKTWN  +LDY     HEF +   NAFLL TCD  PN       N KMHCI  +    +DFDLE E
Subjt:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCI--NDHLDVDFDLELE

TYK24751.1 F-box protein [Cucumis melo var. makuwa]1.6e-1859.41Show/hide
Query:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCIN----DHLDVDFDLEL
        MESMKLGRGLPP I REIL +LVISNLPNLR+VSKTWN  +LDY     HEF +   NAFLL T D  P        NPKM+CI+     HLD+D D +L
Subjt:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCIN----DHLDVDFDLEL

Query:  E
        E
Subjt:  E

XP_008460183.1 PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo]5.7e-1657.58Show/hide
Query:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCI--NDHLDVDFDLELE
        ME+MKLGRGLP  I REIL  +VISN PNLR+VSKTWN  +LDY     HEF +   NAFLL TCD  PN       N KMHCI  +    +DFDLE E
Subjt:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCI--NDHLDVDFDLELE

XP_038890298.1 F-box protein At3g07870-like [Benincasa hispida]2.0e-2467.35Show/hide
Query:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTCDDIPNCNPTNTCNPKMHCI----NDHLDVDFDLELE
        MESMKLGRGLP RI REI SKLVIS+LPNLRL+SKTWN +VLDY +S +HEF TNAF L TCD     N  +  N KMHCI      HLDVDFDLE E
Subjt:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTCDDIPNCNPTNTCNPKMHCI----NDHLDVDFDLELE

TrEMBL top hitse value%identityAlignment
A0A0A0LPC6 Uncharacterized protein2.3e-1857.73Show/hide
Query:  SMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTCDDIPNCNPTNTCNPKMHCIN-----DHLDVDFDLELE
        S+  G+GLPP I + I SKLVISNLP+ R V KTWNHLVL Y  S   +F TNAFLL T D + N      CNPKMHCIN        DVDFDLE E
Subjt:  SMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTCDDIPNCNPTNTCNPKMHCIN-----DHLDVDFDLELE

A0A1S3CCE7 uncharacterized protein LOC1034990682.8e-1657.58Show/hide
Query:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCI--NDHLDVDFDLELE
        ME+MKLGRGLP  I REIL  +VISN PNLR+VSKTWN  +LDY     HEF +   NAFLL TCD  PN       N KMHCI  +    +DFDLE E
Subjt:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCI--NDHLDVDFDLELE

A0A5A7TCF3 F-box protein3.9e-1858.42Show/hide
Query:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCIN----DHLDVDFDLEL
        MESMKLGRGLPP I  EIL +LVISNLPNLR+VSKTWN  +LDY     HEF +   NAFLL T D  P        NPKM+CI+     HLD+D D +L
Subjt:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCIN----DHLDVDFDLEL

Query:  E
        E
Subjt:  E

A0A5A7TE00 F-box protein2.8e-1657.58Show/hide
Query:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCI--NDHLDVDFDLELE
        ME+MKLGRGLP  I REIL  +VISN PNLR+VSKTWN  +LDY     HEF +   NAFLL TCD  PN       N KMHCI  +    +DFDLE E
Subjt:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCI--NDHLDVDFDLELE

A0A5D3DMB7 F-box protein7.8e-1959.41Show/hide
Query:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCIN----DHLDVDFDLEL
        MESMKLGRGLPP I REIL +LVISNLPNLR+VSKTWN  +LDY     HEF +   NAFLL T D  P        NPKM+CI+     HLD+D D +L
Subjt:  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAFLLCTCDDIPNCNPTNTCNPKMHCIN----DHLDVDFDLEL

Query:  E
        E
Subjt:  E

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGTATGAAGTTGGGAAGAGGGCTTCCACCGCGCATTGGTCGTGAAATCTTGTCTAAACTTGTTATCTCCAATTTGCCCAATTTGAGACTCGTCTCTAAAACTTG
GAATCATCTAGTTTTAGATTACGGTGATTCCTGTAATCATGAATTCTTTACAAATGCTTTCCTTCTCTGCACATGTGATGATATCCCCAATTGCAATCCTACTAATACAT
GCAATCCCAAGATGCATTGTATCAACGACCATTTGGATGTGGATTTTGATTTGGAATTGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGTATGAAGTTGGGAAGAGGGCTTCCACCGCGCATTGGTCGTGAAATCTTGTCTAAACTTGTTATCTCCAATTTGCCCAATTTGAGACTCGTCTCTAAAACTTG
GAATCATCTAGTTTTAGATTACGGTGATTCCTGTAATCATGAATTCTTTACAAATGCTTTCCTTCTCTGCACATGTGATGATATCCCCAATTGCAATCCTACTAATACAT
GCAATCCCAAGATGCATTGTATCAACGACCATTTGGATGTGGATTTTGATTTGGAATTGGAATGA
Protein sequenceShow/hide protein sequence
MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTCDDIPNCNPTNTCNPKMHCINDHLDVDFDLELE