; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G21990 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G21990
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionIntraflagellar transport protein
Genome locationClcChr05:30372422..30373757
RNA-Seq ExpressionClc05G21990
SyntenyClc05G21990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608487.1 hypothetical protein SDJN03_01829, partial [Cucurbita argyrosperma subsp. sororia]5.7e-5882.35Show/hide
Query:  MPQR--HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALT
        MPQR  HKN K KENM+SGGGIAAWNVFDNVKTTTKTPEAL+AEIN AI+N EYAR+TA LESPIS   P+D  S AS  TQYD R+AD AYK GCAAL 
Subjt:  MPQR--HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALT

Query:  VGKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED
        VGKLDEALHSLNVSLSKCPPEK SAVAKLQSLISLTSQQL+IRSSNCHEISED
Subjt:  VGKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED

XP_008452533.1 PREDICTED: uncharacterized protein LOC103493531 [Cucumis melo]8.0e-5277.55Show/hide
Query:  HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALTVGKLDE
        HK+ + +E++NS GGI  WNVFDNVKTTTKTPEALMAEIN AISN EY RT A LESPIS   PED   SA+ R+QYDVR+ADGAYK GC ALT+GKLDE
Subjt:  HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALTVGKLDE

Query:  ALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED
        ALHSLNVSLSKCPPEK SAVAK+QSLISLTSQQ++IRSSNC EISED
Subjt:  ALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED

XP_011654103.1 uncharacterized protein LOC101212714 [Cucumis sativus]1.8e-5679.61Show/hide
Query:  MPQRHKN-MKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALTV
        MPQR+++  +E+E++NS GGIAAWNVFD+VKTTTKTPEALM EI  AISN EYARTTA LESPIS  +PED   SA+ R+QYDVRMADGAYK GC ALTV
Subjt:  MPQRHKN-MKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALTV

Query:  GKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED
        GKLDEALHSLNVSLSKCPPEK SAVAK+QSLISLTSQQL+IRSSNC EISED
Subjt:  GKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED

XP_022940904.1 uncharacterized protein LOC111446352 [Cucurbita moschata]4.8e-5781.05Show/hide
Query:  MPQR--HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALT
        MPQR  HKN K KENM+SGGGIAAWNVFDNVKTTTKTPEAL+AEIN AI+N EYAR+TA LESPIS   P+D  S  S  TQYD R+AD AYK GCAAL 
Subjt:  MPQR--HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALT

Query:  VGKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED
        VGKLDEALHSLNVSLSKCPPEK SAVAKLQSLISLTS+QL+IRSSNCHEISED
Subjt:  VGKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED

XP_038899466.1 uncharacterized protein LOC120086752 [Benincasa hispida]2.9e-6286.93Show/hide
Query:  MPQR--HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALT
        MPQR  HKN+KE ENMNSG GIAAWNVFDNVKTTTKTPEALMAEIN AISNFEYARTTACL+SPIS  D EDG SSASLRTQY VRMADG+YK GCAA T
Subjt:  MPQR--HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALT

Query:  VGKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED
        VGKLDEALHSLNVSLSKCPPEK SAVAKLQSLISLTS QL+IRSSN  EISED
Subjt:  VGKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED

TrEMBL top hitse value%identityAlignment
A0A0A0L090 Uncharacterized protein8.9e-5779.61Show/hide
Query:  MPQRHKN-MKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALTV
        MPQR+++  +E+E++NS GGIAAWNVFD+VKTTTKTPEALM EI  AISN EYARTTA LESPIS  +PED   SA+ R+QYDVRMADGAYK GC ALTV
Subjt:  MPQRHKN-MKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALTV

Query:  GKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED
        GKLDEALHSLNVSLSKCPPEK SAVAK+QSLISLTSQQL+IRSSNC EISED
Subjt:  GKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED

A0A1S3BU07 uncharacterized protein LOC1034935313.9e-5277.55Show/hide
Query:  HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALTVGKLDE
        HK+ + +E++NS GGI  WNVFDNVKTTTKTPEALMAEIN AISN EY RT A LESPIS   PED   SA+ R+QYDVR+ADGAYK GC ALT+GKLDE
Subjt:  HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALTVGKLDE

Query:  ALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED
        ALHSLNVSLSKCPPEK SAVAK+QSLISLTSQQ++IRSSNC EISED
Subjt:  ALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED

A0A5A7VF87 Uncharacterized protein3.9e-5277.55Show/hide
Query:  HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALTVGKLDE
        HK+ + +E++NS GGI  WNVFDNVKTTTKTPEALMAEIN AISN EY RT A LESPIS   PED   SA+ R+QYDVR+ADGAYK GC ALT+GKLDE
Subjt:  HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALTVGKLDE

Query:  ALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED
        ALHSLNVSLSKCPPEK SAVAK+QSLISLTSQQ++IRSSNC EISED
Subjt:  ALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED

A0A6J1BP49 uncharacterized protein LOC1110261681.1e-4975.82Show/hide
Query:  MPQRH--KNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALT
        MP R   KN KE+EN+ S GGI AWN FDNV  TTKTPEALMAEIN AIS  EYARTTACLES    A  +DGGS ASL  QYD RMAD AYK GCAAL 
Subjt:  MPQRH--KNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALT

Query:  VGKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED
        VGKLD+ALHSLNVSLSKCPPEK SAVAKL SLI+LTSQQL  RSSNC EISED
Subjt:  VGKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED

A0A6J1FLM9 uncharacterized protein LOC1114463522.3e-5781.05Show/hide
Query:  MPQR--HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALT
        MPQR  HKN K KENM+SGGGIAAWNVFDNVKTTTKTPEAL+AEIN AI+N EYAR+TA LESPIS   P+D  S  S  TQYD R+AD AYK GCAAL 
Subjt:  MPQR--HKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALT

Query:  VGKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED
        VGKLDEALHSLNVSLSKCPPEK SAVAKLQSLISLTS+QL+IRSSNCHEISED
Subjt:  VGKLDEALHSLNVSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCAACGGCATAAGAATATGAAAGAAAAGGAGAATATGAATTCTGGAGGAGGGATCGCCGCTTGGAATGTGTTTGACAATGTGAAGACCACAACGAAGACTCCTGA
AGCTCTAATGGCGGAGATCAATGATGCAATTTCAAATTTCGAATATGCTCGAACCACGGCTTGTTTAGAATCTCCAATTTCTGGCGCTGATCCAGAGGATGGGGGATCTA
GTGCGAGTTTAAGAACTCAGTATGATGTTCGAATGGCGGATGGAGCATACAAGGTAGGTTGTGCAGCATTAACTGTCGGTAAGCTTGACGAGGCTCTTCATTCGTTGAAT
GTTTCACTTTCGAAATGTCCGCCTGAGAAGTTCTCTGCTGTTGCTAAGCTTCAGTCTCTCATCTCGCTAACGTCTCAGCAACTCCGGATCAGATCTTCTAATTGCCATGA
AATTTCAGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
TTTTATACCCATAGTATTTTCCTTTTAAATTTTAATGTCCATTTTGCAGTCATTCTTTCTTATAACTGCAGTTTTCTCAAAGCTCAAAAATCCTTGTCATGGATAAAATC
TTAGAAAATTCATCTTCAAAGAGATAGTTGATCGGACTCGGATTCAAGTTGGAGACGTCGACGAAATCGGCCGGCCGCCCTCTGATGTGAACCAGTGAGGATTACAAAAT
CGAATTCGTAAATATCGAACTCGTAATTGAAGTTCGGCGCCATAGACTTCTTCCAAGAAATCGATCCAATTTGGTATCAGTTTGAGGACGGCAAGGTGTTTGTGAAAATG
CCTCAACGGCATAAGAATATGAAAGAAAAGGAGAATATGAATTCTGGAGGAGGGATCGCCGCTTGGAATGTGTTTGACAATGTGAAGACCACAACGAAGACTCCTGAAGC
TCTAATGGCGGAGATCAATGATGCAATTTCAAATTTCGAATATGCTCGAACCACGGCTTGTTTAGAATCTCCAATTTCTGGCGCTGATCCAGAGGATGGGGGATCTAGTG
CGAGTTTAAGAACTCAGTATGATGTTCGAATGGCGGATGGAGCATACAAGGTAGGTTGTGCAGCATTAACTGTCGGTAAGCTTGACGAGGCTCTTCATTCGTTGAATGTT
TCACTTTCGAAATGTCCGCCTGAGAAGTTCTCTGCTGTTGCTAAGCTTCAGTCTCTCATCTCGCTAACGTCTCAGCAACTCCGGATCAGATCTTCTAATTGCCATGAAAT
TTCAGAAGATTGAATTCGCAGTGAACAGTAAAGATTGCCTGGTTTCCATATGTTCATTCCACCATTTGTTCTTGATTTTTTTTCCTGGGATGAATCTCTCTCATTGTTCT
TCAATAATCATGTTTGACCGTGTGATGAAATGTGAATATGGTTTTTTTTTCTCCTTTCTTTTTGTAAGCAAGGAATGAGTCGTTGATCTTGACGTTTGAGGACCCGTCTT
GGTTTTTTCTTTTTCTTTTTTTATAAAATTAAATAATGCTGTGGTTGTTTAAGAAAAATTTACTATTTTCCTACTTCCA
Protein sequenceShow/hide protein sequence
MPQRHKNMKEKENMNSGGGIAAWNVFDNVKTTTKTPEALMAEINDAISNFEYARTTACLESPISGADPEDGGSSASLRTQYDVRMADGAYKVGCAALTVGKLDEALHSLN
VSLSKCPPEKFSAVAKLQSLISLTSQQLRIRSSNCHEISED