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Clc05G22050 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G22050
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCalcium-binding EF-hand
Genome locationClcChr05:30421833..30425646
RNA-Seq ExpressionClc05G22050
SyntenyClc05G22050
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064377.1 Calcium-binding EF-hand [Cucumis melo var. makuwa]2.9e-3983.51Show/hide
Query:  MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV
        MAL+ VF N +SDYKRCPVPFSR+QLRDIFLKHDGDGDGRLSR+ELKSAFDSLGSNWSRFRARQ LKAAD+DGDGYVTLDELD LLDYA+ R Y ++
Subjt:  MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV

KAG6591371.1 putative calcium-binding protein CML10, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3984.38Show/hide
Query:  ALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV
        A+S +FRN +SDYKRCPVPFSREQLRDIFLKHDGDGDGRLSR+ELKSAFDSLGSNWSRFRARQ LKAADSDGDGYVTLDELDRLLDY++   Y ++
Subjt:  ALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV

KAG6608480.1 putative calcium-binding protein CML10, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3478.02Show/hide
Query:  FRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV
        FR+ I DYKRCPVPF++EQLR+IFL+HD DGDGRLSR+ELK+AF+SLGSNWSRFRARQCLKAADS+GDGYVTLDELD LLDYA+   Y ++
Subjt:  FRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV

KAG7029343.1 Calcium-binding protein CML37, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1856.63Show/hide
Query:  YKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLL
        YKR  VPFS EQL  +F  HDGDGDG+L++ ELK AFD LGS +S FR  + L+AAD DGDG++++ E+D+L+ YA +R Y L
Subjt:  YKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLL

KGN55186.1 hypothetical protein Csa_012423 [Cucumis sativus]5.0e-3983.51Show/hide
Query:  MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV
        MALS VF N +SDYKRCPVPFSR+QLRDIFLKHDGDGDGRLSR+ELKSAF+SLGSNWSRFRARQ LKAAD+DGDGYVTLDELDRLLDYA+   Y ++
Subjt:  MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV

TrEMBL top hitse value%identityAlignment
A0A0A0L4V0 Uncharacterized protein2.4e-3983.51Show/hide
Query:  MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV
        MALS VF N +SDYKRCPVPFSR+QLRDIFLKHDGDGDGRLSR+ELKSAF+SLGSNWSRFRARQ LKAAD+DGDGYVTLDELDRLLDYA+   Y ++
Subjt:  MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV

A0A0A0LRB6 Uncharacterized protein6.4e-1650.6Show/hide
Query:  YKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLL
        YKR  VPFS EQL ++F  HD DGDG L++ ELK AF+ LGS +  FR  + L+AAD++GDG +++DE+ +L+ YA  R Y +
Subjt:  YKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLL

A0A5A7V5B0 Putative Calcium-binding EF-hand family protein1.7e-1651.81Show/hide
Query:  YKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLL
        YKR  VPFS EQL ++F  HD DGDG L++ ELK AF+ LGS +S FR  + L+AAD++GDG +++DE+ +L+ YA  R Y +
Subjt:  YKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLL

A0A5A7VBH2 Calcium-binding EF-hand1.4e-3983.51Show/hide
Query:  MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV
        MAL+ VF N +SDYKRCPVPFSR+QLRDIFLKHDGDGDGRLSR+ELKSAFDSLGSNWSRFRARQ LKAAD+DGDGYVTLDELD LLDYA+ R Y ++
Subjt:  MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV

A0A7N2KRS3 Uncharacterized protein9.9e-1751.72Show/hide
Query:  RNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGY
        R     +KR  VPF+ +QL +IF  HD DGDG+LSR ELK+AF  LGS W  +R  Q L+ AD++ DGY+T DEL +L++YA+  GY
Subjt:  RNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGY

SwissProt top hitse value%identityAlignment
A0T2M3 Polcalcin Cup a 44.4e-0640Show/hide
Query:  SREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDE
        S  +L ++F K D +GDG++S  EL     S+GS       +  ++ AD+DGDGYV+L E
Subjt:  SREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDE

O64943 Polcalcin Jun o 22.0e-0641.67Show/hide
Query:  SREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDE
        S  +L ++F K D +GDG++S  EL     SLGS+      +  ++ AD+DGDGYV+L E
Subjt:  SREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDE

Q6L4D4 Probable calcium-binding protein CML158.9e-0740.32Show/hide
Query:  PFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDE
        P + ++   +F K D +GDGR+SR EL + F S+G   +     + ++ ADSDGDGY++L E
Subjt:  PFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDE

Q8RZB5 Probable calcium-binding protein CML101.6e-0841.18Show/hide
Query:  PVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRL
        P P   E++  +F K D +GDGR+SR EL + F+SLG   +     + +  AD+DGDG+++LDE   L
Subjt:  PVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRL

Q9LE22 Probable calcium-binding protein CML271.5e-0635.48Show/hide
Query:  EQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRL
        E+L+ +F + D +GDG++S +EL   F ++G++++     + L+  D+D DGY+ LDE   L
Subjt:  EQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRL

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein1.1e-0735.48Show/hide
Query:  EQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRL
        E+L+ +F + D +GDG++S +EL   F ++G++++     + L+  D+D DGY+ LDE   L
Subjt:  EQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRL

AT1G18210.2 Calcium-binding EF-hand family protein1.1e-0735.48Show/hide
Query:  EQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRL
        E+L+ +F + D +GDG++S +EL   F ++G++++     + L+  D+D DGY+ LDE   L
Subjt:  EQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRL

AT1G76640.1 Calcium-binding EF-hand family protein2.3e-0537.68Show/hide
Query:  FSREQLRD---IFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLL
        F  E+ RD   +F   D + DGR+S  ELK +F +LG   S   A   +K +D DGDG + ++E   L+
Subjt:  FSREQLRD---IFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLL

AT3G03410.1 EF hand calcium-binding protein family1.7e-0534.92Show/hide
Query:  EQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLL
        + L+++F+  D DGDG++   E      SLG  ++   + + ++AAD DGDGY+  DE   L+
Subjt:  EQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLL

AT3G50770.1 calmodulin-like 411.6e-0635.38Show/hide
Query:  SREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLL
        S+E+LR +F   D DGDG++S  EL+  F S+G   S   A++ +   D+D DG +  ++   L+
Subjt:  SREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTGAGTTCCGTTTTCAGAAACAGCATCAGCGACTACAAGCGATGTCCAGTTCCTTTCTCCAGAGAGCAGCTTCGCGATATTTTCCTCAAGCACGATGGCGACGG
CGACGGCCGACTTTCTCGCATGGAATTGAAATCGGCCTTCGATTCCTTAGGATCTAATTGGAGCCGTTTCAGAGCTCGTCAGTGTCTCAAAGCCGCCGATTCCGACGGCG
ATGGCTACGTTACTCTCGATGAACTTGATCGCCTTCTTGATTACGCTATCGCACGTGGTTACCTCCTCGTCTAA
mRNA sequenceShow/hide mRNA sequence
ACTCAATACAAGCTTTTATCATTATTATTTATTGTTTTTTTAATGTAACTTTGTAATTTTAAACTTTCAAATTCAAACCGTGAATATGCTGAAAATATTAAAATATTTCT
AGAAACAAAAAAGAAAATTTAGATTCAATGCCAAACTCTTACGCGCCGTAACTTTTTAGGCCCAAAATGAAAAGGCATCGCCAAAGCCGAAGGAAGTGATCAATAAATAA
CAGCTTCCCCTGCTAACTCTACTGCAACTCAATCCAGAACCGAAACACAGAAGAAGAAATTGAATCAAGCCGTCGGGATCCGCGGGACAATCCTATGGCGTTGAGTTCCG
TTTTCAGAAACAGCATCAGCGACTACAAGCGATGTCCAGTTCCTTTCTCCAGAGAGCAGCTTCGCGATATTTTCCTCAAGCACGATGGCGACGGCGACGGCCGACTTTCT
CGCATGGAATTGAAATCGGCCTTCGATTCCTTAGGATCTAATTGGAGCCGTTTCAGAGCTCGTCAGTGTCTCAAAGCCGCCGATTCCGACGGCGATGGCTACGTTACTCT
CGATGAACTTGATCGCCTTCTTGATTACGCTATCGCACGTGGTTACCTCCTCGTCTAATTGGCATCCTTAGCATCTTCGTCGGCTTCGAATCCTCAATATCTTCATCGAC
TTTGTTGGCATCTTCATCGATTGAAATAGGTCCGTTTCTTCTTTTCTTCCTCATCGCCAGCCGCCACTTCTTCTTCTTCATTGAGTGAGAGAAAGAGTAGGAGAGATAAG
AGGTGATTGTGAGTGAGGCAAGGAAGTGAGAGTGAGAGCGAGAGCAAAAGCGAGAGAGAACGATAAGAGCGAAACTTTGACGCAACCAACTCTCTCGCTCTCGCTTTTGT
TTCCTTTCTTCACTCACAATCACTTTTATCTCTCTCGCTCTCTCTCACACTTGCTCCATGCACTTTCTTTTCTCATTCACAATCACTCTGATCTCTCTCGCTCACTCTCG
CTCTCGCTCTCTCTTGCTCTGCTCATCAGAGTTGATTGCGTTGAAGTTTGGAAAAGTCACAGAGAGCTCCCTTTAATGACCAGGTCATTAAAATGGGAAATTTACACAGT
GATGACATAAACAGAAGGTCAATTTTCATGCTTGGTTTGGAATAAGTTGAAGAAAAAGAAGAAACACGCTTTTCTTTTTCGATTTTTGTTCTGGAAGACAAAATAACAAG
TAGTTTTTCGATTTTCCTTTCAAAAGCTGACAAAGATGAAGAGTTCGAAAACCTTCACGCCTTCTTTTTATTTCCGTTTTTCTTCAGCGAGTGGGAAA
Protein sequenceShow/hide protein sequence
MALSSVFRNSISDYKRCPVPFSREQLRDIFLKHDGDGDGRLSRMELKSAFDSLGSNWSRFRARQCLKAADSDGDGYVTLDELDRLLDYAIARGYLLV