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Clc05G22590 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G22590
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransmembrane protein
Genome locationClcChr05:30828938..30829759
RNA-Seq ExpressionClc05G22590
SyntenyClc05G22590
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064422.1 hypothetical protein E6C27_scaffold255G001300 [Cucumis melo var. makuwa]4.3e-1974.32Show/hide
Query:  MLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH
        M+ASTHFLIVEGRVL+S+ EKLA  KEKME VKP++     MD+ NSLS SSR++FRSLSFVLASGPSKKGPGH
Subjt:  MLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH

KAG6591405.1 hypothetical protein SDJN03_13751, partial [Cucurbita argyrosperma subsp. sororia]9.7e-2773.96Show/hide
Query:  MAMELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH
        MAME+   AS KRLCFVVGVLLM+AS HFL VEGR L+S SEKLADGKEKM  V+  IG+A + D+VNSLS SS + FRSLSFVLASGPSKKGPGH
Subjt:  MAMELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH

KAG6608443.1 hypothetical protein SDJN03_01785, partial [Cucurbita argyrosperma subsp. sororia]2.0e-1965.62Show/hide
Query:  MAMELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH
        MAMELRG AS +RLCFVVGVLLM+  T F+ VEGRVLK     +AD     E V   IGM  YM  ++SLSGSSR+AF SLSFVL+SGPSKKGPGH
Subjt:  MAMELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH

KGN55240.1 hypothetical protein Csa_012906 [Cucumis sativus]4.8e-2675.28Show/hide
Query:  KASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH
        K STK +CFVVGVLLM+ASTHFLIVEGRVL+S+ EKLAD KE+ME VKPI+     +D+ NSLS SSR++FRSLSFVLASGPSKKGPGH
Subjt:  KASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH

PON48886.1 Transmembrane protein [Parasponia andersonii]3.8e-0741.12Show/hide
Query:  MAMELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKL---ADGKEKMEDVKPIIGMAGY--------MDKVNSLSGSSRNAFRSLSFVLASGP
        M+M+   K S K L FV+G++L++ +  F   + R L+S        ADG E+ E+ +  +GMA +         +   S S SSR   RSLSF LASGP
Subjt:  MAMELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKL---ADGKEKMEDVKPIIGMAGY--------MDKVNSLSGSSRNAFRSLSFVLASGP

Query:  SKKGPGH
        SKKGPGH
Subjt:  SKKGPGH

TrEMBL top hitse value%identityAlignment
A0A0A0KZV6 Uncharacterized protein2.3e-2675.28Show/hide
Query:  KASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH
        K STK +CFVVGVLLM+ASTHFLIVEGRVL+S+ EKLAD KE+ME VKPI+     +D+ NSLS SSR++FRSLSFVLASGPSKKGPGH
Subjt:  KASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH

A0A2P5BJE9 Transmembrane protein1.8e-0741.12Show/hide
Query:  MAMELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKL---ADGKEKMEDVKPIIGMAGY--------MDKVNSLSGSSRNAFRSLSFVLASGP
        M+M+   K S K L FV+G++L++ +  F   + R L+S        ADG E+ E+ +  +GMA +         +   S S SSR   RSLSF LASGP
Subjt:  MAMELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKL---ADGKEKMEDVKPIIGMAGY--------MDKVNSLSGSSRNAFRSLSFVLASGP

Query:  SKKGPGH
        SKKGPGH
Subjt:  SKKGPGH

A0A2P5EGP5 Transmembrane protein2.4e-0741.9Show/hide
Query:  MELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKL---ADGKEKMEDVKPIIGMAGYMDKVN--------SLSGSSRNAFRSLSFVLASGPSK
        M+   K S K LCFV+G++L++ +  F   + R L+S        A G E+ E  +  +GMA +    N        S S SSR   RSLSF LASGPSK
Subjt:  MELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKL---ADGKEKMEDVKPIIGMAGYMDKVN--------SLSGSSRNAFRSLSFVLASGPSK

Query:  KGPGH
        KGPGH
Subjt:  KGPGH

A0A5B7BBR4 Uncharacterized protein (Fragment)1.1e-0745.36Show/hide
Query:  MAM-ELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH
        MAM + R   S K LCFV+GV++++  T F +V  R L+S  E    G E+    +    M  +    N+ S SSR+A RSL F LASGPSKKGPGH
Subjt:  MAM-ELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH

A0A5D3D9C4 Uncharacterized protein2.1e-1974.32Show/hide
Query:  MLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH
        M+ASTHFLIVEGRVL+S+ EKLA  KEKME VKP++     MD+ NSLS SSR++FRSLSFVLASGPSKKGPGH
Subjt:  MLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATGGAATTGAGGGGCAAAGCATCAACCAAACGTCTCTGTTTTGTTGTGGGTGTTCTGTTAATGCTGGCTTCCACCCATTTTCTAATTGTTGAAGGCAGAGTTTT
AAAATCAGATTCAGAGAAGTTAGCTGATGGGAAGGAGAAAATGGAAGATGTGAAGCCAATAATTGGAATGGCAGGTTATATGGACAAAGTTAATTCATTAAGTGGCAGTA
GTCGCAATGCATTTAGAAGCTTGAGTTTCGTGTTGGCGTCTGGGCCAAGTAAAAAAGGTCCTGGCCATTAA
mRNA sequenceShow/hide mRNA sequence
TGCCAATCCCTTTTCACGAGCATTTGAAATCCTTAAAATAATTGGAAGGCAGCAGAGTCAAATAAACACACGTTATTGGTATTGAACCACCGTCCTGATTCTTCAGAATT
CCAAAATCAACTGACCCTTTACCTTATAAATACACCAAATTCTCCTACTGACAATCACCAAAATTAGCAGCTCAAGGAGAAGAAGAAGTAAAAGGGAGATCAATGGCAAT
GGAATTGAGGGGCAAAGCATCAACCAAACGTCTCTGTTTTGTTGTGGGTGTTCTGTTAATGCTGGCTTCCACCCATTTTCTAATTGTTGAAGGCAGAGTTTTAAAATCAG
ATTCAGAGAAGTTAGCTGATGGGAAGGAGAAAATGGAAGATGTGAAGCCAATAATTGGAATGGCAGGTTATATGGACAAAGTTAATTCATTAAGTGGCAGTAGTCGCAAT
GCATTTAGAAGCTTGAGTTTCGTGTTGGCGTCTGGGCCAAGTAAAAAAGGTCCTGGCCATTAACCATTTTTGCCTTCTTAGCTTCTTCATTGTTTTTGTATAATTCTGCA
CAAATTTACAACTTTTGTATTAGTTTTAGGGAGGGAAGATTTTGTTTCTTCATTGATTTGAATAACAGAGTTTCATTCTGAAATTCAATTTGCATCGAACTAAGGACAAG
AAGAAAAGCGAGGAATTGCGGGAATATGTTTCTCTTTATGGCAATTGACAAAAAGTAAAGAAAGGAATATATGTAATTTACTTTTATCGAGAGAGGTTTGAAATGCATGC
GAGGAGGAGGGCTTAAAAACAGATGGTTGCTTTGATATGAAAACAAATGAAA
Protein sequenceShow/hide protein sequence
MAMELRGKASTKRLCFVVGVLLMLASTHFLIVEGRVLKSDSEKLADGKEKMEDVKPIIGMAGYMDKVNSLSGSSRNAFRSLSFVLASGPSKKGPGH