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Clc05G22740 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G22740
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S29
Genome locationClcChr05:30906462..30913190
RNA-Seq ExpressionClc05G22740
SyntenyClc05G22740
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649878.1 hypothetical protein Csa_012522 [Cucumis sativus]2.7e-3549.25Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVSGYALSASHIFIAAFLFQQYQCLSNFRM-RISLID---IDITVTEAENSICSFIFMDKNFLYSMAP
        RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+                 Q      N R+  ++L D   ID  V  ++ SI        + L    P
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVSGYALSASHIFIAAFLFQQYQCLSNFRM-RISLID---IDITVTEAENSICSFIFMDKNFLYSMAP

Query:  --------------NHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGG
                      NH HV +N+CL  I  NRKLK Q  EH N  RK +   ++NL DY PIDPVPSSK S+K GPIEHG+PL+PHMPNP PP   QPGG
Subjt:  --------------NHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGG

Query:  F
        +
Subjt:  F

XP_008452634.1 PREDICTED: uncharacterized protein LOC103493594 isoform X1 [Cucumis melo]5.7e-3887.91Show/hide
Query:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
        MA N+LHVESNE LFA PSNRK+KLQD E  NPTRKN+RVG+VNLYDY PIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
Subjt:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV

XP_008452635.1 PREDICTED: uncharacterized protein LOC103493594 isoform X2 [Cucumis melo]5.7e-3887.91Show/hide
Query:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
        MA N+LHVESNE LFA PSNRK+KLQD E  NPTRKN+RVG+VNLYDY PIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
Subjt:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV

XP_011654146.1 uncharacterized protein LOC105435308 [Cucumis sativus]1.0e-3990.11Show/hide
Query:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
        MAPNHLHVESNE LFA PSNRK+KLQD E SNPTRKN+RVG+VNLYDY PIDPVPSSKRSIKHGPIEHGSPLIPHMP+PSPPDQPQPGGFV
Subjt:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV

XP_038897195.1 uncharacterized protein LOC120085331 [Benincasa hispida]4.7e-4089.01Show/hide
Query:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
        M PNHLHVESN+CLFA PSNRK+KLQD  HSNPTR N+RVGN+NLYDYSPIDPVP+SKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
Subjt:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV

TrEMBL top hitse value%identityAlignment
A0A0A0L0G3 Uncharacterized protein5.1e-4090.11Show/hide
Query:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
        MAPNHLHVESNE LFA PSNRK+KLQD E SNPTRKN+RVG+VNLYDY PIDPVPSSKRSIKHGPIEHGSPLIPHMP+PSPPDQPQPGGFV
Subjt:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV

A0A1S3BU91 uncharacterized protein LOC103493594 isoform X22.8e-3887.91Show/hide
Query:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
        MA N+LHVESNE LFA PSNRK+KLQD E  NPTRKN+RVG+VNLYDY PIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
Subjt:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV

A0A1S3BUB3 uncharacterized protein LOC103493594 isoform X12.8e-3887.91Show/hide
Query:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
        MA N+LHVESNE LFA PSNRK+KLQD E  NPTRKN+RVG+VNLYDY PIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
Subjt:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV

A0A5A7V8H4 Putative Glycosyl hydrolase family 35 protein2.8e-3887.91Show/hide
Query:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
        MA N+LHVESNE LFA PSNRK+KLQD E  NPTRKN+RVG+VNLYDY PIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV
Subjt:  MAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV

A0A6J1IVH6 uncharacterized protein LOC111480980 isoform X24.9e-3574.77Show/hide
Query:  NSICSFIFMDKNFLYSMAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQ
        +SICS    D      M PN  HV SNECL A PSN+KLKLQD + S+P RKN+RV NVNLYDYSPIDPVPSSKRSIKHGPIEH SPLIP+MPNPSPPDQ
Subjt:  NSICSFIFMDKNFLYSMAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNIRVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQ

Query:  PQPGGFV
        PQPGGFV
Subjt:  PQPGGFV

SwissProt top hitse value%identityAlignment
P62273 40S ribosomal protein S296.4e-0876.47Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK+
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV

P62274 40S ribosomal protein S296.4e-0876.47Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK+
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV

P62276 40S ribosomal protein S296.4e-0876.47Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK+
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV

Q5I7K3 40S ribosomal protein S292.1e-1190.91Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q680P8 40S ribosomal protein S291.6e-1193.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein1.2e-1293.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT3G44010.1 Ribosomal protein S14p/S29e family protein1.2e-1293.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT4G33865.1 Ribosomal protein S14p/S29e family protein1.2e-1293.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT5G01075.1 Glycosyl hydrolase family 35 protein3.3e-0753.7Show/hide
Query:  VNLYDYS-PIDPVPSSKRSIKHGPIEHGSPLIPHMPNP------SPPDQPQPGG
        V L DY+ P+DP P++K SIK GPIEHG+PL P++P P       PP Q Q GG
Subjt:  VNLYDYS-PIDPVPSSKRSIKHGPIEHGSPLIPHMPNP------SPPDQPQPGG

AT5G43150.1 unknown protein1.3e-1150Show/hide
Query:  EWWRKMTSPLRSFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNE
        EWW  M  P R    R   R+GFR  GL++L  DV +CEYED+H+MW +L +NE
Subjt:  EWWRKMTSPLRSFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATGGTGGAGGAAGATGACTTCTCCGTTGCGAAGTTTTACTTTCAGAGTCGCCGCTCGTCTCGGATTTCGCAAACGCGGGCTAGTGAAACTTGGGCGAGATGTGAA
GGCATGTGAATACGAGGACGTGCACGTGATGTGGGAGATGTTGAAGAGAAACGAAACAGATCAGAGGCCGTGGAAAAGCGGTTCTTTTGTCCACGATTTTGATTCGGTGA
TTAAACGGTGCGTTTCAAGAGGCGGTTGCTATTGGTATCCGGGAGCTGCTCTATATAAACGATGCAGCCGTCTAGGGTTACAAAGTTTTGCGAATTTAGCGAAGCGGCTG
TCAGAGTTGAAAAGGGTTTCTAAGGTAATCGATCAACGAAGAAGACGATGGGGCATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCTGGTTCTCGTACTTGG
TATGCCTCCTCCTACAATTTTGATCCATGTTCAACGCTGCTCTTTGAACTGTTCATATAATTTTGATCTTATTGGCCCTAATTTCGGGGCGAATCTCTTATCTGTTGTCG
TATCTGGCATTCGACTGGGATTTTCTTTGACCAATTCGATTGCATTCCGAGTCTGCGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGC
TTCCGTAGTAATGCCAAAGAAATTGGCTTCATCAAGGTTTCCGGTTATGCTCTCTCTGCTTCACACATCTTCATTGCTGCTTTTCTTTTCCAGCAATATCAATGCCTCTC
TAACTTCCGAATGAGGATCTCACTGATTGACATAGACATTACAGTTACTGAGGCGGAAAATAGTATTTGTTCTTTCATCTTCATGGATAAAAATTTCCTTTATTCAATGG
CTCCAAACCACCTCCATGTAGAATCAAATGAATGTTTGTTTGCCATACCATCAAACAGGAAGCTGAAACTGCAGGATTACGAACATAGTAACCCGACAAGGAAGAACATT
CGTGTGGGTAACGTAAATCTTTACGACTACAGCCCCATCGATCCAGTTCCAAGCTCAAAGAGATCCATAAAACATGGACCAATAGAACATGGATCTCCTCTTATACCTCA
TATGCCAAATCCTTCTCCTCCTGATCAACCACAGCCTGGTGGTTTTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATGGTGGAGGAAGATGACTTCTCCGTTGCGAAGTTTTACTTTCAGAGTCGCCGCTCGTCTCGGATTTCGCAAACGCGGGCTAGTGAAACTTGGGCGAGATGTGAA
GGCATGTGAATACGAGGACGTGCACGTGATGTGGGAGATGTTGAAGAGAAACGAAACAGATCAGAGGCCGTGGAAAAGCGGTTCTTTTGTCCACGATTTTGATTCGGTGA
TTAAACGGTGCGTTTCAAGAGGCGGTTGCTATTGGTATCCGGGAGCTGCTCTATATAAACGATGCAGCCGTCTAGGGTTACAAAGTTTTGCGAATTTAGCGAAGCGGCTG
TCAGAGTTGAAAAGGGTTTCTAAGGTAATCGATCAACGAAGAAGACGATGGGGCATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCTGGTTCTCGTACTTGG
TATGCCTCCTCCTACAATTTTGATCCATGTTCAACGCTGCTCTTTGAACTGTTCATATAATTTTGATCTTATTGGCCCTAATTTCGGGGCGAATCTCTTATCTGTTGTCG
TATCTGGCATTCGACTGGGATTTTCTTTGACCAATTCGATTGCATTCCGAGTCTGCGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGC
TTCCGTAGTAATGCCAAAGAAATTGGCTTCATCAAGGTTTCCGGTTATGCTCTCTCTGCTTCACACATCTTCATTGCTGCTTTTCTTTTCCAGCAATATCAATGCCTCTC
TAACTTCCGAATGAGGATCTCACTGATTGACATAGACATTACAGTTACTGAGGCGGAAAATAGTATTTGTTCTTTCATCTTCATGGATAAAAATTTCCTTTATTCAATGG
CTCCAAACCACCTCCATGTAGAATCAAATGAATGTTTGTTTGCCATACCATCAAACAGGAAGCTGAAACTGCAGGATTACGAACATAGTAACCCGACAAGGAAGAACATT
CGTGTGGGTAACGTAAATCTTTACGACTACAGCCCCATCGATCCAGTTCCAAGCTCAAAGAGATCCATAAAACATGGACCAATAGAACATGGATCTCCTCTTATACCTCA
TATGCCAAATCCTTCTCCTCCTGATCAACCACAGCCTGGTGGTTTTGTGTAG
Protein sequenceShow/hide protein sequence
MEWWRKMTSPLRSFTFRVAARLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQRPWKSGSFVHDFDSVIKRCVSRGGCYWYPGAALYKRCSRLGLQSFANLAKRL
SELKRVSKVIDQRRRRWGIQTCGIHIQRTMDLVLVLGMPPPTILIHVQRCSLNCSYNFDLIGPNFGANLLSVVVSGIRLGFSLTNSIAFRVCGNPHGLIRKYGLMCCRQC
FRSNAKEIGFIKVSGYALSASHIFIAAFLFQQYQCLSNFRMRISLIDIDITVTEAENSICSFIFMDKNFLYSMAPNHLHVESNECLFAIPSNRKLKLQDYEHSNPTRKNI
RVGNVNLYDYSPIDPVPSSKRSIKHGPIEHGSPLIPHMPNPSPPDQPQPGGFV